RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 PI4K2AQ9BTU6 479 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 OSBPL1AQ9BXW6 950 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 NKX1-2Q9UD57 310 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-231ENST00000557433 DNPEPQ9ULA0 475 aa17.17■□□□□ 0.34
SHMT2-231ENST00000557433 CCDC22O60826 627 aa17.16■□□□□ 0.34
SHMT2-231ENST00000557433 C4BPAP04003 597 aaKnown RBP17.16■□□□□ 0.34
SHMT2-231ENST00000557433 KRT1P04264 644 aa17.16■□□□□ 0.34
SHMT2-231ENST00000557433 GNA15P30679 374 aa17.16■□□□□ 0.34
SHMT2-231ENST00000557433 DSG3P32926 999 aa17.16■□□□□ 0.34
SHMT2-231ENST00000557433 PIK3CAP42336 1068 aa17.16■□□□□ 0.34
SHMT2-231ENST00000557433 SSR1P43307 286 aaKnown RBP17.16■□□□□ 0.34
SHMT2-231ENST00000557433 ADCY1Q08828 1119 aa17.16■□□□□ 0.34
SHMT2-231ENST00000557433 OASLQ15646 514 aaKnown RBP17.16■□□□□ 0.34
SHMT2-231ENST00000557433 SLC1A5Q15758 541 aa17.16■□□□□ 0.34
SHMT2-231ENST00000557433 SEPT7Q16181 437 aaKnown RBP17.16■□□□□ 0.34
SHMT2-231ENST00000557433 APBB1IPQ7Z5R6 666 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-231ENST00000557433 SYTL5Q8TDW5 730 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-231ENST00000557433 FAM213AQ9BRX8 229 aa17.16■□□□□ 0.34
SHMT2-231ENST00000557433 DHRS4Q9BTZ2 278 aa17.16■□□□□ 0.34
SHMT2-231ENST00000557433 SLCO1B3Q9NPD5 702 aa17.16■□□□□ 0.34
SHMT2-231ENST00000557433 SCN9AQ15858 1988 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 ONECUT3O60422 494 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-231ENST00000557433 DGAT1O75907 488 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 LSM8O95777 96 aaKnown RBP17.15■□□□□ 0.34
SHMT2-231ENST00000557433 TFDP3Q5H9I0 405 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 LVRNQ6Q4G3 990 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 SPOCD1Q6ZMY3 1216 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 RBBP8NLQ8NC74 664 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-231ENST00000557433 ATP6V0A1Q93050 837 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 AGBL1Q96MI9 1066 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 FHDC1Q9C0D6 1143 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-231ENST00000557433 SPATS2LQ9NUQ6 558 aaKnown RBP17.15■□□□□ 0.34
SHMT2-231ENST00000557433 STYXL1Q9Y6J8 313 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 COL11A2P13942 1736 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-231ENST00000557433 TMEM191CA6NGB0 347 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 HGSO14964 777 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-231ENST00000557433 MAFGO15525 162 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 DNAJC6O75061 913 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 ECM2O94769 699 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-231ENST00000557433 TGDSO95455 350 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 IL1BP01584 269 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 TMEM191BP0C7N4 346 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 PCK1P35558 622 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 ABL2P42684 1182 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 ARL4CP56559 192 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 PIGHQ14442 188 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-231ENST00000557433 HIF1AQ16665 826 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 TAF1BQ53T94 588 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-231ENST00000557433 FKBP1CQ5VVH2 108 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 PLA2G4FQ68DD2 849 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 STYK1Q6J9G0 422 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 ADGRD1Q6QNK2 874 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 ANO5Q75V66 913 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 CLNKQ7Z7G1 428 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 ZBED8Q8IZ13 594 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 C4orf33Q8N1A6 199 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 TTC13Q8NBP0 860 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 ZNF516Q92618 1163 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 BICD1Q96G01 975 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 MMADHCQ9H3L0 296 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-231ENST00000557433 ARHGAP28Q9P2N2 729 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 GRID1Q9ULK0 1009 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 USTQ9Y2C2 406 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 PCDHB4Q9Y5E5 795 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 PCDHA10Q9Y5I2 948 aa17.15■□□□□ 0.34
SHMT2-231ENST00000557433 NFIBO00712 420 aa17.14■□□□□ 0.33
SHMT2-231ENST00000557433 MMP8P22894 467 aa17.14■□□□□ 0.33
SHMT2-231ENST00000557433 EPHB2P29323 1055 aa17.14■□□□□ 0.33
SHMT2-231ENST00000557433 PDIA2Q13087 525 aaKnown RBP17.14■□□□□ 0.33
SHMT2-231ENST00000557433 PGM5Q15124 567 aa17.14■□□□□ 0.33
SHMT2-231ENST00000557433 PRUNE1Q86TP1 453 aa17.14■□□□□ 0.33
SHMT2-231ENST00000557433 PPIL6Q8IXY8 311 aa17.14■□□□□ 0.33
SHMT2-231ENST00000557433 NIPA2Q8N8Q9 360 aa17.14■□□□□ 0.33
SHMT2-231ENST00000557433 KCNV2Q8TDN2 545 aa17.14■□□□□ 0.33
SHMT2-231ENST00000557433 DNAJC9Q8WXX5 260 aa17.14■□□□□ 0.33
SHMT2-231ENST00000557433 BSNDQ8WZ55 320 aa17.14■□□□□ 0.33
SHMT2-231ENST00000557433 SPOCK2Q92563 424 aa17.14■□□□□ 0.33
SHMT2-231ENST00000557433 GJD4Q96KN9 370 aaPredicted RBP17.14■□□□□ 0.33
SHMT2-231ENST00000557433 KIFC3Q9BVG8 833 aa17.14■□□□□ 0.33
SHMT2-231ENST00000557433 TRIM55Q9BYV6 548 aa17.14■□□□□ 0.33
SHMT2-231ENST00000557433 ZNF518BQ9C0D4 1074 aa17.14■□□□□ 0.33
SHMT2-231ENST00000557433 FBXO28Q9NVF7 368 aa17.14■□□□□ 0.33
SHMT2-231ENST00000557433 MTO1Q9Y2Z2 717 aaKnown RBP17.14■□□□□ 0.33
SHMT2-231ENST00000557433 FARP1Q9Y4F1 1045 aaPredicted RBP17.14■□□□□ 0.33
SHMT2-231ENST00000557433 hCG_1818297A0A087WSY0 165 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 CCNE2O96020 404 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 LDHAP00338 332 aaKnown RBP17.13■□□□□ 0.33
SHMT2-231ENST00000557433 KRT4P19013 534 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 TNNI1P19237 187 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 SLFN12LQ6IEE8 588 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 ZNF449Q6P9G9 518 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 MFSD7Q6UXD7 560 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 POLNQ7Z5Q5 900 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 CEP170P1Q96L14 293 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 MAK16Q9BXY0 300 aaKnown RBP17.13■□□□□ 0.33
SHMT2-231ENST00000557433 DENND2DQ9H6A0 471 aaPredicted RBP17.13■□□□□ 0.33
SHMT2-231ENST00000557433 ACSS3Q9H6R3 686 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 PDLIM7Q9NR12 457 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 RABGEF1Q9UJ41 708 aa17.13■□□□□ 0.33
SHMT2-231ENST00000557433 ZMYND8Q9ULU4 1186 aaPredicted RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms