RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 N4BP3O15049 544 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 JAK2O60674 1132 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 USO1O60763 962 aaKnown RBP10.99□□□□□ -0.65
SCFD1-220ENST00000556486 GJA1P17302 382 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 CYP11B2P19099 503 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 SPINK2P20155 84 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 VIPR2P41587 438 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 NAMPTP43490 491 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 CXCL12P48061 93 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 PXNP49023 591 aaPredicted RBP10.99□□□□□ -0.65
SCFD1-220ENST00000556486 CCR3P51677 355 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 ARPP19P56211 112 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 ST3GAL1Q11201 340 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 ELAVL2Q12926 359 aaKnown RBP10.99□□□□□ -0.65
SCFD1-220ENST00000556486 MAPK6Q16659 721 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 WDR44Q5JSH3 913 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 C16orf46Q6P387 395 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 PDXDC1Q6P996 788 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 CEP68Q76N32 757 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 RTL10Q7L3V2 364 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 MAEAQ7L5Y9 396 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 ZBTB8OSQ8IWT0 167 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 ELSPBP1Q96BH3 223 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 CITED4Q96RK1 184 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 TRMT61BQ9BVS5 477 aaKnown RBP10.99□□□□□ -0.65
SCFD1-220ENST00000556486 SAP130Q9H0E3 1048 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 TSPAN10Q9H1Z9 355 aaPredicted RBP10.99□□□□□ -0.65
SCFD1-220ENST00000556486 ARRDC1-AS1Q9H2J1 176 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 PDZD7Q9H5P4 517 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 SNTG2Q9NY99 539 aa10.99□□□□□ -0.65
SCFD1-220ENST00000556486 KIF26AQ9ULI4 1882 aaPredicted RBP10.98□□□□□ -0.65
SCFD1-220ENST00000556486 SLC38A8A6NNN8 435 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 LRP3O75074 770 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 MED24O75448 989 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 THP07101 528 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 LIG1P18858 919 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 ATP2B1P20020 1258 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 TKTP29401 623 aaKnown RBP10.98□□□□□ -0.65
SCFD1-220ENST00000556486 CCR2P41597 374 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 TRAPPC10P48553 1259 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 NEK4P51957 841 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 EFNA5P52803 228 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 PRPF4BQ13523 1007 aaKnown RBP10.98□□□□□ -0.65
SCFD1-220ENST00000556486 PPP2R5DQ14738 602 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 PPP2R5AQ15172 486 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 SAFBQ15424 915 aaKnown RBP eCLIP10.98□□□□□ -0.65
SCFD1-220ENST00000556486 SF3A1Q15459 793 aaKnown RBP10.98□□□□□ -0.65
SCFD1-220ENST00000556486 GLRA4Q5JXX5 417 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 VITQ6UXI7 678 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 ERMNQ8TAM6 284 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 BSNDQ8WZ55 320 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 LLPHQ9BRT6 129 aaKnown RBP10.98□□□□□ -0.65
SCFD1-220ENST00000556486 FOXP1Q9H334 677 aaPredicted RBP10.98□□□□□ -0.65
SCFD1-220ENST00000556486 GOLGA2P5Q9HBQ8 144 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 ZNF334Q9HCZ1 680 aaPredicted RBP10.98□□□□□ -0.65
SCFD1-220ENST00000556486 KCNH3Q9ULD8 1083 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 MAP4K5Q9Y4K4 846 aa10.98□□□□□ -0.65
SCFD1-220ENST00000556486 TRIP11Q15643 1979 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 F5P12259 2224 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 ANKRD11Q6UB99 2663 aaPredicted RBP10.97□□□□□ -0.65
SCFD1-220ENST00000556486 MAN2B1O00754 1011 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 PRRG1O14668 218 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 GIPC1O14908 333 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 RECQL4O94761 1208 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 STAU1O95793 577 aaKnown RBP10.97□□□□□ -0.65
SCFD1-220ENST00000556486 LRG1P02750 347 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 PRKCBP05771 671 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 OR52Z1P0C646 297 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 CHRNB1P11230 501 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 MCM7P33993 719 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 BRCC3P46736 316 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 EPHA4P54764 986 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 RAB33AQ14088 237 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 DCAF4L1Q3SXM0 396 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 HAUS3Q68CZ6 603 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 TCEAL6Q6IPX3 200 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.97□□□□□ -0.65
SCFD1-220ENST00000556486 VASH1Q7L8A9 365 aaPredicted RBP10.97□□□□□ -0.65
SCFD1-220ENST00000556486 NOSTRINQ8IVI9 506 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 C12orf50Q8NA57 414 aaPredicted RBP10.97□□□□□ -0.65
SCFD1-220ENST00000556486 FBXO18Q8NFZ0 1043 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 UBXN4Q92575 508 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 DNASE1L2Q92874 299 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 TCEAL3Q969E4 200 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 ADPGKQ9BRR6 497 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 ZFP14Q9HCL3 533 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 GDE1Q9NZC3 331 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 GDAQ9Y2T3 454 aa10.97□□□□□ -0.65
SCFD1-220ENST00000556486 IGF2RP11717 2491 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 WDR27A2RRH5 827 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 K7ESF4 209 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 TOP3BO95985 862 aaKnown RBP10.96□□□□□ -0.65
SCFD1-220ENST00000556486 EDN1P05305 212 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 PROS1P07225 676 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 PTPN2P17706 415 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 FGFR3P22607 806 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 EIF1AXP47813 144 aaKnown RBP10.96□□□□□ -0.65
SCFD1-220ENST00000556486 PDIA5Q14554 519 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 ACAP1Q15027 740 aa10.96□□□□□ -0.65
SCFD1-220ENST00000556486 UVSSAQ2YD98 709 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms