RNA–Protein interactions for RNA: ENST00000555905.5

TMEM260-208, Transcript of transmembrane protein 260, humanhuman

TSL 5

Gene TMEM260, Length 766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-208ENST00000555905 INCA1Q0VD86 236 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 ELAVL2Q12926 359 aaKnown RBP11.78□□□□□ -0.52
TMEM260-208ENST00000555905 TIGD5Q53EQ6 642 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 TDRD12Q587J7 1177 aaKnown RBP11.78□□□□□ -0.52
TMEM260-208ENST00000555905 RASIP1Q5U651 963 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 IRF2BP2Q7Z5L9 587 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 METTL23Q86XA0 190 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 ADGRF2Q8IZF7 708 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 PDCL2Q8N4E4 241 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 FIBCD1Q8N539 461 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 UBR7Q8N806 425 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 RBBP8NLQ8NC74 664 aaPredicted RBP11.78□□□□□ -0.52
TMEM260-208ENST00000555905 SUSD3Q96L08 255 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 ZNF558Q96NG5 402 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 RAD9AQ99638 391 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 UBE2OQ9C0C9 1292 aaKnown RBP11.78□□□□□ -0.52
TMEM260-208ENST00000555905 AAASQ9NRG9 546 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 HCSTQ9UBK5 93 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 ADAM28Q9UKQ2 775 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 L1RE1Q9UN81 338 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 CNTN6Q9UQ52 1028 aa11.78□□□□□ -0.52
TMEM260-208ENST00000555905 MRPL42Q9Y6G3 142 aaKnown RBP11.78□□□□□ -0.52
TMEM260-208ENST00000555905 SF3B1O75533 1304 aaKnown RBP eCLIP11.78□□□□□ -0.529e-6■■■■■ 68.9
TMEM260-208ENST00000555905 F8W810 466 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 I3L4J1 428 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 M0QZQ0 153 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 CILPO75339 1184 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 ITGB1P05556 798 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 SKILP12757 684 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 TYMPP19971 482 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 FECHP22830 423 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 WARSP23381 471 aaKnown RBP11.77□□□□□ -0.53
TMEM260-208ENST00000555905 IGFBP6P24592 240 aaPredicted RBP11.77□□□□□ -0.53
TMEM260-208ENST00000555905 CLCN1P35523 988 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 GNL1P36915 607 aaPredicted RBP11.77□□□□□ -0.53
TMEM260-208ENST00000555905 PRKCIP41743 596 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 BRCC3P46736 316 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 LHX1P48742 406 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 PDE6CP51160 858 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 ZNF132P52740 706 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 NDST1P52848 882 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 HS1BP3Q53T59 392 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 WSCD1Q658N2 575 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 E4F1Q66K89 784 aaPredicted RBP11.77□□□□□ -0.53
TMEM260-208ENST00000555905 WDR59Q6PJI9 974 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 KCNT2Q6UVM3 1135 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 CD300LGQ6UXG3 332 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 LIMS2Q7Z4I7 341 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 VPS36Q86VN1 386 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 UNC93AQ86WB7 457 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 GPIHBP1Q8IV16 184 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 EFCAB3Q8N7B9 438 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 OR6B3Q8NGW1 331 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 SPATA18Q8TC71 538 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 MRPL45Q9BRJ2 306 aaKnown RBP11.77□□□□□ -0.53
TMEM260-208ENST00000555905 NT5C1AQ9BXI3 368 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 DEF6Q9H4E7 631 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 OCEL1Q9H607 264 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 HAUS4Q9H6D7 363 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 PUF60Q9UHX1 559 aaKnown RBP11.77□□□□□ -0.53
TMEM260-208ENST00000555905 PCDHB12Q9Y5F1 795 aa11.77□□□□□ -0.53
TMEM260-208ENST00000555905 A8MXQ7 604 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 NT5C1B-RDH14C9J2C7 533 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 H0YGN5 161 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 SYN3O14994 580 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 CYP11A1P05108 521 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 PAEPP09466 180 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 CYP11B1P15538 503 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 ANXA13P27216 316 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 GNA15P30679 374 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 PPM1AP35813 382 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 PBX3P40426 434 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 RAD23BP54727 409 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 SHHQ15465 462 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 ZNF394Q53GI3 561 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 C9orf50Q5SZB4 431 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 HGSNATQ68CP4 663 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 SLC47A2Q86VL8 602 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 ZNF677Q86XU0 584 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 CCDC170Q8IYT3 715 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 THEM5Q8N1Q8 247 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 PDCD7Q8N8D1 485 aaKnown RBP11.76□□□□□ -0.53
TMEM260-208ENST00000555905 COLGALT1Q8NBJ5 622 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 KBTBD7Q8WVZ9 684 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 TMEM176AQ96HP8 235 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 IGSF21Q96ID5 467 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 TNIP3Q96KP6 325 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 CCDC42Q96M95 316 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 ZNF830Q96NB3 372 aaPredicted RBP11.76□□□□□ -0.53
TMEM260-208ENST00000555905 NHEJ1Q9H9Q4 299 aaPredicted RBP11.76□□□□□ -0.53
TMEM260-208ENST00000555905 MARCH5Q9NX47 278 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 SPG21Q9NZD8 308 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 ARHGAP20Q9P2F6 1191 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 KIAA1257Q9ULG3 409 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 TSC2P49815 1807 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 KIAA1671Q9BY89 1806 aa11.76□□□□□ -0.53
TMEM260-208ENST00000555905 SSU72P8A0A1W2PR75 194 aa11.75□□□□□ -0.53
TMEM260-208ENST00000555905 SOWAHDA6NJG2 315 aa11.75□□□□□ -0.53
TMEM260-208ENST00000555905 GABRDO14764 452 aa11.75□□□□□ -0.53
TMEM260-208ENST00000555905 ARHGAP6O43182 974 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms