RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 MYO16Q9Y6X6 1858 aa11.95□□□□□ -0.5
SHMT2-220ENST00000555634 COL4A4P53420 1690 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-220ENST00000555634 H0YGN5 161 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 THAP12O43422 761 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 AKR1B10O60218 316 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 URODP06132 367 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 GALTP07902 379 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 CD19P15391 556 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 WARSP23381 471 aaKnown RBP11.94□□□□□ -0.5
SHMT2-220ENST00000555634 CTNNB1P35222 781 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 GNL1P36915 607 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-220ENST00000555634 AARSP49588 968 aaKnown RBP eCLIP11.94□□□□□ -0.5
SHMT2-220ENST00000555634 APBA1Q02410 837 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 SPA17Q15506 151 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 SGO2Q562F6 1265 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 FUT10Q6P4F1 479 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 TRIM72Q6ZMU5 477 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 ANKS3Q6ZW76 656 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 CEP57Q86XR8 500 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 PDCL2Q8N4E4 241 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 TC2NQ8N9U0 490 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 CXorf38Q8TB03 319 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 BAP1Q92560 729 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 VWCEQ96DN2 955 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 KREMEN1Q96MU8 473 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 NOX5Q96PH1 765 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 C11orf84Q9BUA3 381 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-220ENST00000555634 PLVAPQ9BX97 442 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 RC3H2Q9HBD1 1191 aaKnown RBP11.94□□□□□ -0.5
SHMT2-220ENST00000555634 DDX43Q9NXZ2 648 aaKnown RBP11.94□□□□□ -0.5
SHMT2-220ENST00000555634 CACNG4Q9UBN1 327 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 HESX1Q9UBX0 185 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 PCDHA11Q9Y5I1 949 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 PATJQ8NI35 1801 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 PTPRDP23468 1912 aa11.94□□□□□ -0.5
SHMT2-220ENST00000555634 M0QZQ0 153 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 ARHGAP6O43182 974 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 CCP110O43303 1012 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 CILPO75339 1184 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 CYP11A1P05108 521 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 HNRNPH3P31942 346 aaKnown RBP11.93□□□□□ -0.5
SHMT2-220ENST00000555634 CA8P35219 290 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 NDST1P52848 882 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 SNX16P57768 344 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 CDK17Q00537 523 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 ARID5BQ14865 1188 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 SOWAHAQ2M3V2 549 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 USP41Q3LFD5 358 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 TIGD5Q53EQ6 642 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 FAM171A1Q5VUB5 890 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 TMCO2Q7Z6W1 182 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-220ENST00000555634 LRRC8AQ8IWT6 810 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 FAM71AQ8IYT1 594 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 CCDC170Q8IYT3 715 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 DCP1BQ8IZD4 617 aaKnown RBP11.93□□□□□ -0.5
SHMT2-220ENST00000555634 TDHQ8IZJ6 230 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 C3orf58Q8NDZ4 430 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 SP7Q8TDD2 431 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-220ENST00000555634 RABGGTAQ92696 567 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 TMEM176AQ96HP8 235 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 IGSF21Q96ID5 467 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 PAAF1Q9BRP4 392 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.93□□□□□ -0.5
SHMT2-220ENST00000555634 CWH43Q9H720 699 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 L1RE1Q9UN81 338 aa11.93□□□□□ -0.5
SHMT2-220ENST00000555634 CEP290O15078 2479 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 SSU72P8A0A1W2PR75 194 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 FOXN3O00409 490 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-220ENST00000555634 CYP26A1O43174 497 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 VDRP11473 427 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 TNFAIP3P21580 790 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 DEKP35659 375 aaKnown RBP11.92□□□□□ -0.5
SHMT2-220ENST00000555634 PRKCIP41743 596 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 BRCC3P46736 316 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 GLUD2P49448 558 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 SHHQ15465 462 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 MEA1Q16626 185 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 CTXN3Q4LDR2 81 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 ZNF394Q53GI3 561 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 HS1BP3Q53T59 392 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 RASIP1Q5U651 963 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 WSCD1Q658N2 575 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 C4orf50Q6ZRC1 276 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 SLC39A11Q8N1S5 342 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 B3GALNT2Q8NCR0 500 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 KAT5Q92993 513 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 HEXIM2Q96MH2 286 aaKnown RBP11.92□□□□□ -0.5
SHMT2-220ENST00000555634 SYT15Q9BQS2 421 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 MED10Q9BTT4 135 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 TTPALQ9BTX7 342 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 HERC2P3Q9BVR0 1158 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 CDH9Q9ULB4 789 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 STXBP5LQ9Y2K9 1186 aa11.92□□□□□ -0.5
SHMT2-220ENST00000555634 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-220ENST00000555634 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.91□□□□□ -0.5
SHMT2-220ENST00000555634 OR6C75A6NL08 312 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 I3L4J1 428 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 SPTLC1O15269 473 aa11.91□□□□□ -0.5
SHMT2-220ENST00000555634 LSM8O95777 96 aaKnown RBP11.91□□□□□ -0.5
SHMT2-220ENST00000555634 SOD2P04179 222 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 132.7 ms