RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 GDAP2Q9NXN4 497 aa14.76□□□□□ -0.05
SHMT2-219ENST00000555563 DNMT3BQ9UBC3 853 aaKnown RBP14.76□□□□□ -0.05
SHMT2-219ENST00000555563 HOOK1Q9UJC3 728 aaKnown RBP14.76□□□□□ -0.05
SHMT2-219ENST00000555563 MAFFQ9ULX9 164 aa14.76□□□□□ -0.05
SHMT2-219ENST00000555563 YIPF1Q9Y548 306 aa14.76□□□□□ -0.05
SHMT2-219ENST00000555563 SNX9Q9Y5X1 595 aa14.76□□□□□ -0.05
SHMT2-219ENST00000555563 DOCK6Q96HP0 2047 aa14.75□□□□□ -0.05
SHMT2-219ENST00000555563 LRRIQ3A6PVS8 624 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-219ENST00000555563 PRR33A8MZF0 331 aa14.75□□□□□ -0.05
SHMT2-219ENST00000555563 HUS1O60921 280 aa14.75□□□□□ -0.05
SHMT2-219ENST00000555563 FSHRP23945 695 aa14.75□□□□□ -0.05
SHMT2-219ENST00000555563 TWF1Q12792 350 aa14.75□□□□□ -0.05
SHMT2-219ENST00000555563 NFIL3Q16649 462 aa14.75□□□□□ -0.05
SHMT2-219ENST00000555563 ADGRF2Q8IZF7 708 aa14.75□□□□□ -0.05
SHMT2-219ENST00000555563 THEM5Q8N1Q8 247 aa14.75□□□□□ -0.05
SHMT2-219ENST00000555563 PLCD3Q8N3E9 789 aa14.75□□□□□ -0.05
SHMT2-219ENST00000555563 ATAD1Q8NBU5 361 aa14.75□□□□□ -0.05
SHMT2-219ENST00000555563 ZCWPW1Q9H0M4 648 aa14.75□□□□□ -0.05
SHMT2-219ENST00000555563 LIMD1Q9UGP4 676 aa14.75□□□□□ -0.05
SHMT2-219ENST00000555563 FRMD4BQ9Y2L6 1034 aa14.75□□□□□ -0.05
SHMT2-219ENST00000555563 R3HCC1Q9Y3T6 440 aaKnown RBP14.75□□□□□ -0.05
SHMT2-219ENST00000555563 DOCK8Q8NF50 2099 aa14.75□□□□□ -0.05
SHMT2-219ENST00000555563 NOTCH4Q99466 2003 aa14.75□□□□□ -0.05
SHMT2-219ENST00000555563 AKAP3O75969 853 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 RHOP08100 348 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 PRCPP42785 496 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 CDR1P51861 262 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 UBE2HP62256 183 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 DLG4P78352 724 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 CLDN10P78369 228 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 DUSP4Q13115 394 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 SLC5A9Q2M3M2 681 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 SOWAHAQ2M3V2 549 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 PABPC1LQ4VXU2 614 aaKnown RBP14.74□□□□□ -0.05
SHMT2-219ENST00000555563 SLC39A12Q504Y0 691 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 ZNF658Q5TYW1 1059 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-219ENST00000555563 TDRD10Q5VZ19 366 aaKnown RBP14.74□□□□□ -0.05
SHMT2-219ENST00000555563 CENPPQ6IPU0 288 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 LRRTM3Q86VH5 581 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 OSTM1Q86WC4 334 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 ELOA2Q8IYF1 753 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-219ENST00000555563 TOP6BLQ8N6T0 577 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 ITFG1Q8TB96 612 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 PARD3BQ8TEW8 1205 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.74□□□□□ -0.05
SHMT2-219ENST00000555563 EPS15L1Q9UBC2 864 aa14.74□□□□□ -0.05
SHMT2-219ENST00000555563 HCRTO43612 131 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 CST3P01034 146 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-219ENST00000555563 ACAT1P24752 427 aaKnown RBP14.73□□□□□ -0.05
SHMT2-219ENST00000555563 MYL6P60660 151 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 ZXDAP98168 799 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 BIRC3Q13489 604 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 MTMR3Q13615 1198 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 EDRF1Q3B7T1 1238 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 COBLL1Q53SF7 1204 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 LIMS2Q7Z4I7 341 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 TMEM86AQ8N2M4 240 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 SPATA18Q8TC71 538 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 TMC2Q8TDI7 906 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 KBTBD7Q8WVZ9 684 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 ING5Q8WYH8 240 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 EDAQ92838 391 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 XYLT2Q9H1B5 865 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 SMOC2Q9H3U7 446 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 DDX43Q9NXZ2 648 aaKnown RBP14.73□□□□□ -0.05
SHMT2-219ENST00000555563 CEP72Q9P209 647 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 MAN1B1Q9UKM7 699 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 SORCS3Q9UPU3 1222 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 SLC27A5Q9Y2P5 690 aa14.73□□□□□ -0.05
SHMT2-219ENST00000555563 GABRDO14764 452 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 MAPK13O15264 365 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 PHACTR2O75167 634 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 SOAT2O75908 522 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 TRIM49P0CI25 452 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 TRIM49CP0CI26 452 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 LAMP2P13473 410 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 RPL13P26373 211 aaKnown RBP14.72□□□□□ -0.05
SHMT2-219ENST00000555563 TSPY1Q01534 308 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 TRPC3Q13507 836 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 CCDC142Q17RM4 750 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 INTS6LQ5JSJ4 861 aaKnown RBP14.72□□□□□ -0.05
SHMT2-219ENST00000555563 C1orf220Q5T0J3 134 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 NPAS3Q8IXF0 933 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 FAM186BQ8IYM0 893 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 ELMOD1Q8N336 334 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 FGF13Q92913 245 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 EEF2KMTQ96G04 330 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 CORO1BQ9BR76 489 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 DNAJC25Q9H1X3 360 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 AVENQ9NQS1 362 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-219ENST00000555563 TMLHEQ9NVH6 421 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 ABI2Q9NYB9 513 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-219ENST00000555563 CDH7Q9ULB5 785 aa14.72□□□□□ -0.05
SHMT2-219ENST00000555563 MRPS23Q9Y3D9 190 aaKnown RBP14.72□□□□□ -0.05
SHMT2-219ENST00000555563 STAU1O95793 577 aaKnown RBP14.71□□□□□ -0.05
SHMT2-219ENST00000555563 C4BPAP04003 597 aaKnown RBP14.71□□□□□ -0.05
SHMT2-219ENST00000555563 CEBPBP17676 345 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 PTPN2P17706 415 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 VAMP7P51809 220 aa14.71□□□□□ -0.05
SHMT2-219ENST00000555563 AP3M2P53677 418 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms