RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 ZBTB45Q96K62 511 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-207ENST00000553837 GORASP1Q9BQQ3 440 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 SYT15Q9BQS2 421 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 TEX13BQ9BXU2 312 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 ACAD9Q9H845 621 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 C17orf75Q9HAS0 396 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 GRHL1Q9NZI5 618 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 PCDHA3Q9Y5H8 950 aa12.97□□□□□ -0.33
SHMT2-207ENST00000553837 ATP2A1O14983 1001 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 SUPT20HL2P0C7V6 817 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 TPBGLP0DKB5 382 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 KRT5P13647 590 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 GARTP22102 1010 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 RTP1P59025 263 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 CUL3Q13618 768 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 SUPT20HL1Q3ZLR7 823 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 C2CD6Q53TS8 623 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 SPOPLQ6IQ16 392 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 PHLDB2Q86SQ0 1253 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 UBL4BQ8N7F7 174 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 ENDOVQ8N8Q3 282 aaKnown RBP12.96□□□□□ -0.33
SHMT2-207ENST00000553837 MCPH1Q8NEM0 835 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 UHMK1Q8TAS1 419 aaKnown RBP12.96□□□□□ -0.33
SHMT2-207ENST00000553837 SH3TC2Q8TF17 1288 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 ARHGEF2Q92974 986 aaKnown RBP12.96□□□□□ -0.33
SHMT2-207ENST00000553837 CCDC97Q96F63 343 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-207ENST00000553837 RBM41Q96IZ5 413 aaKnown RBP12.96□□□□□ -0.33
SHMT2-207ENST00000553837 TMEM237Q96Q45 408 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 TRIM4Q9C037 500 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 LRMDAQ9H2I8 198 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 GTF3C4Q9UKN8 822 aa12.96□□□□□ -0.33
SHMT2-207ENST00000553837 SYNGAP1Q96PV0 1343 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 PHF2O75151 1096 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 PEX11AO75192 247 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 RNF8O76064 485 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 UPP2O95045 317 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 CFHP08603 1231 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 HSPA6P17066 643 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 CHRNA3P32297 505 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 GTF2H1P32780 548 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 ACOT2P49753 483 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 HIRAP54198 1017 aaPredicted RBP12.96□□□□□ -0.34
SHMT2-207ENST00000553837 EMC2Q15006 297 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 CLEC16AQ2KHT3 1053 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 WASHC2DQ5SRD0 308 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 PPP1R15BQ5SWA1 713 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 ARMC3Q5W041 872 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 ACAD10Q6JQN1 1059 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 DNAJC9Q8WXX5 260 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 UTP4Q969X6 686 aaKnown RBP12.96□□□□□ -0.34
SHMT2-207ENST00000553837 RMDN2Q96LZ7 410 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 SERPINB12Q96P63 405 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 NUDCD1Q96RS6 583 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.96□□□□□ -0.346e-6■■□□□ 12.1
SHMT2-207ENST00000553837 AFG3L2Q9Y4W6 797 aa12.96□□□□□ -0.34
SHMT2-207ENST00000553837 C19orf81C9J6K1 198 aa12.95□□□□□ -0.34
SHMT2-207ENST00000553837 VNN1O95497 513 aa12.95□□□□□ -0.34
SHMT2-207ENST00000553837 LMNAP02545 664 aaKnown RBP12.95□□□□□ -0.34
SHMT2-207ENST00000553837 FGFR4P22455 802 aa12.95□□□□□ -0.34
SHMT2-207ENST00000553837 GLRA2P23416 452 aa12.95□□□□□ -0.34
SHMT2-207ENST00000553837 CLDN10P78369 228 aa12.95□□□□□ -0.34
SHMT2-207ENST00000553837 TDRD10Q5VZ19 366 aaKnown RBP12.95□□□□□ -0.34
SHMT2-207ENST00000553837 TRMT10CQ7L0Y3 403 aaKnown RBP12.95□□□□□ -0.34
SHMT2-207ENST00000553837 PSPC1Q8WXF1 523 aaKnown RBP12.95□□□□□ -0.34
SHMT2-207ENST00000553837 INPP5DQ92835 1189 aa12.95□□□□□ -0.34
SHMT2-207ENST00000553837 WNT8AQ9H1J5 351 aa12.95□□□□□ -0.34
SHMT2-207ENST00000553837 R3HDMLQ9H3Y0 253 aa12.95□□□□□ -0.34
SHMT2-207ENST00000553837 KCNK9Q9NPC2 374 aa12.95□□□□□ -0.34
SHMT2-207ENST00000553837 ZMYND8Q9ULU4 1186 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-207ENST00000553837 MYH9P35579 1960 aaKnown RBP12.95□□□□□ -0.34
SHMT2-207ENST00000553837 MYPNQ86TC9 1320 aa12.95□□□□□ -0.34
SHMT2-207ENST00000553837 EXTL3O43909 919 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 C4BPAP04003 597 aaKnown RBP12.94□□□□□ -0.34
SHMT2-207ENST00000553837 UNGP13051 313 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-207ENST00000553837 SP100P23497 879 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-207ENST00000553837 SSTR3P32745 418 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-207ENST00000553837 RPL21P46778 160 aaKnown RBP12.94□□□□□ -0.34
SHMT2-207ENST00000553837 KCNJ1P48048 391 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 TUBP50607 506 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 GCNT1Q02742 428 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 DYNC1I2Q13409 638 aaKnown RBP12.94□□□□□ -0.34
SHMT2-207ENST00000553837 XKR3Q5GH77 459 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 TREML2Q5T2D2 321 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 DAB2IPQ5VWQ8 1189 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 IRGCQ6NXR0 463 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 VSIG1Q86XK7 387 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 SLC13A5Q86YT5 568 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-207ENST00000553837 MYLK4Q86YV6 388 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-207ENST00000553837 RBBP8NLQ8NC74 664 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-207ENST00000553837 CFAP61Q8NHU2 1237 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 CPA5Q8WXQ8 436 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 TRAPPC9Q96Q05 1148 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 TGS1Q96RS0 853 aaKnown RBP12.94□□□□□ -0.34
SHMT2-207ENST00000553837 TSPAN18Q96SJ8 248 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 HERPUD2Q9BSE4 406 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 APOBEC3GQ9HC16 384 aaKnown RBP12.94□□□□□ -0.34
SHMT2-207ENST00000553837 GGA3Q9NZ52 723 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 PCYOX1Q9UHG3 505 aa12.94□□□□□ -0.34
SHMT2-207ENST00000553837 MAFBQ9Y5Q3 323 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-207ENST00000553837 LOC285556D6RIA3 1793 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms