RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 CCT6BQ92526 530 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 HPS3Q969F9 1004 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 MAML3Q96JK9 1138 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 CCDC138Q96M89 665 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 EYA3Q99504 573 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 ACE2Q9BYF1 805 aaPredicted RBP4.47□□□□□ -1.69
LIMA1-208ENST00000551691 KRTAP17-1Q9BYP8 105 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 WNT8AQ9H1J5 351 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 KMT5AQ9NQR1 393 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 USP40Q9NVE5 1235 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 MYOTQ9UBF9 498 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 ANAPC4Q9UJX5 808 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 DNM3Q9UQ16 869 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 PCDHB4Q9Y5E5 795 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 DUSP10Q9Y6W6 482 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 X6R8D5 127 aa4.47□□□□□ -1.69
LIMA1-208ENST00000551691 NUP98P52948 1817 aa4.46□□□□□ -1.69
LIMA1-208ENST00000551691 DCHS1Q96JQ0 3298 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 SPTBN4Q9H254 2564 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 CAPN8A6NHC0 703 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 GOLIM4O00461 696 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 NBNO60934 754 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 ANXA1P04083 346 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 ZKSCAN1P17029 563 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-208ENST00000551691 CORO7P57737 925 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 CCT2P78371 535 aaKnown RBP4.46□□□□□ -1.7
LIMA1-208ENST00000551691 EFEMP1Q12805 493 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 TRIM14Q14142 442 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 NR1I3Q14994 352 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 DACT2Q5SW24 774 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 SPTY2D1Q68D10 685 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-208ENST00000551691 CCDC70Q6NSX1 233 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 XRRA1Q6P2D8 792 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 PAQR3Q6TCH7 311 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 B3GNT9Q6UX72 402 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 LIPIQ6XZB0 460 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 USP45Q70EL2 814 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 MIGA2Q7L4E1 593 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 MCM10Q7L590 875 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 CHST15Q7LFX5 561 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-208ENST00000551691 PHOSPHO1Q8TCT1 267 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 ZBED3Q96IU2 234 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-208ENST00000551691 PHACTR3Q96KR7 559 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 PRMT6Q96LA8 375 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-208ENST00000551691 NOX5Q96PH1 765 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 UIMC1Q96RL1 719 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.46□□□□□ -1.7
LIMA1-208ENST00000551691 SMOC1Q9H4F8 434 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 PDLIM7Q9NR12 457 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 ARHGAP28Q9P2N2 729 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 FBLN5Q9UBX5 448 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 DPP7Q9UHL4 492 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 NUDT5Q9UKK9 219 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 SNX13Q9Y5W8 968 aa4.46□□□□□ -1.7
LIMA1-208ENST00000551691 MORC2Q9Y6X9 1032 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-208ENST00000551691 COL2A1P02458 1487 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-208ENST00000551691 DMDP11532 3685 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 hCG_1642624A0A1W2PR95 340 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 TCRBV5S4A2TA0A5A2 114 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 CFAP69A5D8W1 941 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 H3BML4 177 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 NTRK1P04629 796 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 CYBBP04839 570 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 CENPBP07199 599 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-208ENST00000551691 CYP2C8P10632 490 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 PDCP20941 246 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 XPAP23025 273 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-208ENST00000551691 PEX2P28328 305 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 CNR2P34972 360 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 HALP42357 657 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 MTNR1BP49286 362 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 USP14P54578 494 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 MANFP55145 182 aaKnown RBP4.45□□□□□ -1.7
LIMA1-208ENST00000551691 LGALS4P56470 323 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 RPS8P62241 208 aaKnown RBP4.45□□□□□ -1.7
LIMA1-208ENST00000551691 ROM1Q03395 351 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 ADCY2Q08462 1091 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 TUSC3Q13454 348 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 VGLL4Q14135 290 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 ZXDCQ2QGD7 858 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-208ENST00000551691 SUPT20HL1Q3ZLR7 823 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 SPATS1Q496A3 300 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 ALFQ53S48 1182 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 RNF220Q5VTB9 566 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 FSTL4Q6MZW2 842 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 ERAP2Q6P179 960 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 FAM180AQ6UWF9 173 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 KIF6Q6ZMV9 814 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 APOBEC3FQ8IUX4 373 aaKnown RBP4.45□□□□□ -1.7
LIMA1-208ENST00000551691 Q8N1Y9 231 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 CALML6Q8TD86 181 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 POF1BQ8WVV4 589 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 SEC14L1Q92503 715 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 ALG3Q92685 438 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 DLG3Q92796 817 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 ZKSCAN4Q969J2 545 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-208ENST00000551691 PGBD4Q96DM1 585 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 MTFMTQ96DP5 389 aaKnown RBP4.45□□□□□ -1.7
LIMA1-208ENST00000551691 DDX11Q96FC9 970 aa4.45□□□□□ -1.7
LIMA1-208ENST00000551691 FAM89AQ96GI7 184 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms