RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 OR2W6PQ8NHA6 318 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 SHISA4Q96DD7 197 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 TEX13BQ9BXU2 312 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 PIDD1Q9HB75 910 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 NKX1-2Q9UD57 310 aaPredicted RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 ANGPTL2Q9UKU9 493 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 MAFFQ9ULX9 164 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 SH3GLB1Q9Y371 365 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 MRPS23Q9Y3D9 190 aaKnown RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 KRIT1O00522 736 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 DAPK3O43293 454 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 KLRC1P26715 233 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 CYP1B1Q16678 543 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 C4orf50Q6ZRC1 276 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 SYDE1Q6ZW31 735 aaPredicted RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 MARK2Q7KZI7 788 aaKnown RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 ZNF554Q86TJ5 538 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 CROCCP3Q8IVE0 287 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 CCDC65Q8IXS2 484 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 ARHGAP24Q8N264 748 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 ZNF296Q8WUU4 475 aaPredicted RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 SLC35B4Q969S0 331 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 MBOAT7Q96N66 472 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 ZNF184Q99676 751 aaPredicted RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 SELENOSQ9BQE4 189 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 FOXP3Q9BZS1 431 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 SYNCQ9H7C4 482 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 ETNK1Q9HBU6 452 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 SSU72Q9NP77 194 aaKnown RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 STK17AQ9UEE5 414 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 PAIP2BQ9ULR5 123 aaKnown RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 KCNJ14Q9UNX9 436 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 PTPN22Q9Y2R2 807 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 PNMA6FA0A0J9YX94 578 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 TRIM49BA6NDI0 452 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 RASGRF2O14827 1237 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 ZBTB5O15062 677 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 GAS8O95995 478 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 IL1BP01584 269 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 PLEKP08567 350 aaPredicted RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 NDUFV2P19404 249 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 POLE2P56282 527 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 PLCB3Q01970 1234 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 SP3Q02447 781 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 CAV1Q03135 178 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 ANKRD40Q6AI12 368 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 ACAD11Q709F0 780 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 ADGRF4Q8IZF3 695 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 ST13P4Q8IZP2 240 aaPredicted RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 DNERQ8NFT8 737 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 TPCN2Q8NHX9 752 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 MDM1Q8TC05 714 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 DYDC1Q8WWB3 177 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 EMID1Q96A84 441 aaPredicted RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 TUBGCP5Q96RT8 1024 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 POLR3CQ9BUI4 534 aaPredicted RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 CRISPLD2Q9H0B8 497 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 UPF3AQ9H1J1 476 aaKnown RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 TMEM60Q9H2L4 133 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 GPAMQ9HCL2 828 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 SMARCAL1Q9NZC9 954 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 SENP1Q9P0U3 644 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 SRRDQ9UH36 339 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 FARP1Q9Y4F1 1045 aaPredicted RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 A0A1W2PRQ8 180 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 A6NJY4 79 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 KIAA0391O15091 583 aaKnown RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 MAP3K7O43318 606 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 RIPK2O43353 540 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 CRABP2P29373 138 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 RAP1GDS1P52306 607 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 GFPT1Q06210 699 aaPredicted RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 TAF1CQ15572 869 aaPredicted RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 PFKFB3Q16875 520 aaPredicted RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 TMEM95Q3KNT9 176 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 RNF220Q5VTB9 566 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 CCSAPQ6IQ19 270 aaPredicted RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 XRRA1Q6P2D8 792 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 ZDHHC24Q6UX98 284 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 LRRC74BQ6ZQY2 392 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 RRAGAQ7L523 313 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 SNX32Q86XE0 403 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 KLHL7Q8IXQ5 586 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 LRRC47Q8N1G4 583 aaKnown RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 METTL13Q8N6R0 699 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 C12orf50Q8NA57 414 aaPredicted RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 ANKLE1Q8NAG6 615 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 CTNNBL1Q8WYA6 563 aaPredicted RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 SLC7A6OSQ96CW6 309 aaPredicted RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 ATG4CQ96DT6 458 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 HIC2Q96JB3 615 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 TRIM9Q9C026 710 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 PHACTR1Q9C0D0 580 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 BLZF1Q9H2G9 400 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 PAK6Q9NQU5 681 aaPredicted RBP5.56□□□□□ -1.52
USP28-213ENST00000544967 ITM2BQ9Y287 266 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 DOCK5Q9H7D0 1870 aa5.56□□□□□ -1.52
USP28-213ENST00000544967 A8MUI8 341 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 C2CD2LO14523 706 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms