RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	ARID3A	Q99856	593 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	LMAN2L	Q9H0V9	348 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	ZBP1	Q9H171	429 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	PRDM12	Q9H4Q4	367 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	PLCB1	Q9NQ66	1216 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	CHST7	Q9NS84	486 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	DDX43	Q9NXZ2	648 aa	Known RBP	10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545	SIK3	Q9Y2K2	1263 aa		10.86	□□□□□ -0.67
CPSF7-221	ENST00000543545		A0A1W2PQC6	194 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	OR6C75	A6NL08	312 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	AP5Z1	O43299	807 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	OAZ2	O95190	189 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	CYP11A1	P05108	521 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	UCHL3	P15374	230 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	RPL17	P18621	184 aa	Known RBP	10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	IGFBP4	P22692	258 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	ACAT1	P24752	427 aa	Known RBP	10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	KLRC2	P26717	231 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	PCSK1	P29120	753 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	IRS1	P35568	1242 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	ZNF75D	P51815	510 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	NDST1	P52848	882 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	GCNT1	Q02742	428 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	CREM	Q03060	361 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	GRIN2C	Q14957	1233 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	PTPN14	Q15678	1187 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	ZNF394	Q53GI3	561 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	KIAA0319	Q5VV43	1072 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	IQCE	Q6IPM2	695 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	PDE12	Q6L8Q7	609 aa	Known RBP	10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	TMEM270	Q6UE05	265 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	PPFIBP1	Q86W92	1011 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	OSTM1	Q86WC4	334 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	GLYCTK	Q8IVS8	523 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	DRC7	Q8IY82	874 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	RNF168	Q8IYW5	571 aa	Predicted RBP	10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	PIAS4	Q8N2W9	510 aa	Predicted RBP	10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	MRPL43	Q8N983	215 aa	Known RBP	10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	LNX1	Q8TBB1	728 aa	Predicted RBP	10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	KBTBD7	Q8WVZ9	684 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	PIK3R5	Q8WYR1	880 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	SPAG5	Q96R06	1193 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	NUP58	Q9BVL2	599 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	EMILIN2	Q9BXX0	1053 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	BCO2	Q9BYV7	579 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	SDCBP2	Q9H190	292 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	TTYH1	Q9H313	450 aa	Predicted RBP	10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	GRPEL1	Q9HAV7	217 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	SIX2	Q9NPC8	291 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	NLRC4	Q9NPP4	1024 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	CISH	Q9NSE2	258 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	FBXL5	Q9UKA1	691 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	BARX2	Q9UMQ3	279 aa	Predicted RBP	10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	PCDHGC5	Q9Y5F6	944 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	FHOD1	Q9Y613	1164 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	TRIOBP	Q9H2D6	2365 aa		10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	TNRC18	O15417	2968 aa	Predicted RBP	10.85	□□□□□ -0.67
CPSF7-221	ENST00000543545	C2orf71	A6NGG8	1288 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	GABRD	O14764	452 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	HCRT	O43612	131 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	ADCY5	O95622	1261 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	EFEMP2	O95967	443 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	TPM1	P09493	284 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	CPB1	P15086	417 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	RFX1	P22670	979 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	LMO2	P25791	158 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	OR1D2	P34982	312 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	CDR1	P51861	262 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	PSMC1	P62191	440 aa	Known RBP	10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	ORC1	Q13415	861 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	MRPL58	Q14197	206 aa	Known RBP	10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	GSE1	Q14687	1217 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	DRAP1	Q14919	205 aa	Predicted RBP	10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	TMC6	Q7Z403	805 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	RBM23	Q86U06	439 aa	Known RBP	10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	UNC93A	Q86WB7	457 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	DCP1B	Q8IZD4	617 aa	Known RBP	10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	SPATA18	Q8TC71	538 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	CPLX3	Q8WVH0	158 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	PPP2R3C	Q969Q6	453 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	TNIP3	Q96KP6	325 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	HEXIM2	Q96MH2	286 aa	Known RBP	10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	KREMEN1	Q96MU8	473 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	GAS2L1	Q99501	681 aa	Predicted RBP	10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	SYT15	Q9BQS2	421 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	ACBD6	Q9BR61	282 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	NT5C1A	Q9BXI3	368 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	OXCT2	Q9BYC2	517 aa	Predicted RBP	10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	STK33	Q9BYT3	514 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	GAN	Q9H2C0	597 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	TLE6	Q9H808	572 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	MTRR	Q9UBK8	725 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	STXBP5L	Q9Y2K9	1186 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	10.84	□□□□□ -0.67	4e-11	■■□□□ 12.6
CPSF7-221	ENST00000543545	BACE2	Q9Y5Z0	518 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	CDY1	Q9Y6F8	540 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	COL4A6	Q14031	1691 aa		10.84	□□□□□ -0.67
CPSF7-221	ENST00000543545	HIDE1	A8MVS5	230 aa		10.83	□□□□□ -0.68
CPSF7-221	ENST00000543545	FSCN2	O14926	492 aa		10.83	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms