RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	HEATR3	Q7Z4Q2	680 aa		5.09	□□□□□ -1.59
PRKDC-210	ENST00000541488	FAM9A	Q8IZU1	332 aa	Predicted RBP	5.09	□□□□□ -1.59
PRKDC-210	ENST00000541488	PSD4	Q8NDX1	1056 aa		5.09	□□□□□ -1.59
PRKDC-210	ENST00000541488	RGMA	Q96B86	450 aa		5.09	□□□□□ -1.59
PRKDC-210	ENST00000541488	SLC13A1	Q9BZW2	595 aa		5.09	□□□□□ -1.59
PRKDC-210	ENST00000541488	NEU2	Q9Y3R4	380 aa		5.09	□□□□□ -1.59
PRKDC-210	ENST00000541488	PCDHA1	Q9Y5I3	950 aa		5.09	□□□□□ -1.59
PRKDC-210	ENST00000541488	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488		A0A0B4J269	797 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	PRSS29P	A6NIE9	313 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488		M0QYG6	137 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	MPPED1	O15442	326 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	ORC4	O43929	436 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	PRDX5	P30044	214 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	GRIA3	P42263	894 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	RECQL	P46063	649 aa	Predicted RBP	5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	PIK3CG	P48736	1102 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	NDUFV1	P49821	464 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	EIF2B5	Q13144	721 aa	Known RBP	5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	NOG	Q13253	232 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	TUBB3	Q13509	450 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	ZBTB46	Q86UZ6	589 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	RASAL3	Q86YV0	1011 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	CAMKK1	Q8N5S9	505 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	NELL1	Q92832	810 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	SCAMP4	Q969E2	229 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	CFAP97	Q9P2B7	532 aa		5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	FEZ2	Q9UHY8	353 aa	Predicted RBP	5.08	□□□□□ -1.6
PRKDC-210	ENST00000541488	PROM1	O43490	865 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	ONECUT2	O95948	504 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	PDHA1	P08559	390 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	NR2F6	P10588	404 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	CYP2C19	P33261	490 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	MAP2K6	P52564	334 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	POU6F2	P78424	691 aa	Predicted RBP	5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	HABP2	Q14520	560 aa	Predicted RBP	5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	HLX	Q14774	488 aa	Predicted RBP	5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	KIAA0895L	Q68EN5	471 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	TMPRSS9	Q7Z410	1059 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	PPP1R3B	Q86XI6	285 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	POC1B	Q8TC44	478 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	PGBD1	Q96JS3	809 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	UROC1	Q96N76	676 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	ACTRT3	Q9BYD9	372 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	GTPBP4	Q9BZE4	634 aa	Known RBP	5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	LMBRD1	Q9NUN5	540 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	GNL3L	Q9NVN8	582 aa	Known RBP	5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	ETAA1	Q9NY74	926 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	DKK3	Q9UBP4	350 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	IP6K2	Q9UHH9	426 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	POLH	Q9Y253	713 aa		5.07	□□□□□ -1.6
PRKDC-210	ENST00000541488	ADGRA2	Q96PE1	1338 aa		5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	DTNB	O60941	627 aa		5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	ANXA1	P04083	346 aa		5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	RARB	P10826	455 aa		5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	EXOSC9	Q06265	439 aa	Known RBP	5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	RBM20	Q5T481	1227 aa	Known RBP	5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	USP45	Q70EL2	814 aa		5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	GRASP	Q7Z6J2	395 aa	Predicted RBP	5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	FAM90A1	Q86YD7	464 aa		5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	PDSS2	Q86YH6	399 aa		5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	CPA6	Q8N4T0	437 aa		5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	FAM46D	Q8NEK8	389 aa		5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	HSPBAP1	Q96EW2	488 aa		5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	GPATCH3	Q96I76	525 aa		5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	CNPPD1	Q9BV87	410 aa		5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	TTYH3	Q9C0H2	523 aa		5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	TINAGL1	Q9GZM7	467 aa	Predicted RBP	5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	AASDHPPT	Q9NRN7	309 aa		5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	SIDT1	Q9NXL6	827 aa	Known RBP	5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	ARPP21	Q9UBL0	812 aa	Predicted RBP	5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488	FRMD4B	Q9Y2L6	1034 aa		5.06	□□□□□ -1.6
PRKDC-210	ENST00000541488		H3BUI4	141 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	TRIAP1	O43715	76 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	RBMXL2	O75526	392 aa	Known RBP	5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	GNAI2	P04899	355 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	POU2F2	P09086	479 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	EBLN1	P0CF75	366 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	ITGAL	P20701	1170 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	GPD1	P21695	349 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	HK3	P52790	923 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	PROK1	P58294	105 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	ITIH3	Q06033	890 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	BOP1	Q14137	746 aa	Known RBP	5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	PTPRR	Q15256	657 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	PTPRO	Q16827	1216 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	PGS1	Q32NB8	556 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	TMEM119	Q4V9L6	283 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	VPS53	Q5VIR6	699 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	ZNF788	Q6ZQV5	615 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	USP37	Q86T82	979 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	CELF5	Q8N6W0	485 aa	Known RBP	5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	DDB2	Q92466	427 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	HAPLN3	Q96S86	360 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	MRPL46	Q9H2W6	279 aa	Known RBP	5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	ARMT1	Q9H993	441 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	RAD54B	Q9Y620	910 aa		5.05	□□□□□ -1.6
PRKDC-210	ENST00000541488	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		5.04	□□□□□ -1.6
PRKDC-210	ENST00000541488	CCDC151	A5D8V7	595 aa		5.04	□□□□□ -1.6
PRKDC-210	ENST00000541488	MANSC4	A6NHS7	340 aa	Predicted RBP	5.04	□□□□□ -1.6

Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms