RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 RIOX2Q8IUF8 465 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 WDR49Q8IV35 697 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 KLHL29Q96CT2 875 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 APOBEC2Q9Y235 224 aaKnown RBP14.79□□□□□ -0.04
USP3-204ENST00000540797 PCDHB12Q9Y5F1 795 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 SLC30A1Q9Y6M5 507 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 SLC4A7Q9Y6M7 1214 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 CCDC195A0A1B0GUA6 201 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 M0QYT0 321 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 MAPK13O15264 365 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 RAB27AP51159 221 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 PSMC6P62333 389 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 CDH18Q13634 790 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 ACAD10Q6JQN1 1059 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 THOC1Q96FV9 657 aaKnown RBP14.79□□□□□ -0.04
USP3-204ENST00000540797 WDR24Q96S15 920 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 SMIM24O75264 130 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 GHRP10912 638 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 PON1P27169 355 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 LAMB3Q13751 1172 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 TRPM4Q8TD43 1214 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 KRT35Q92764 455 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 MS4A14Q96JA4 679 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 POP1Q99575 1024 aaKnown RBP14.79□□□□□ -0.04
USP3-204ENST00000540797 AGXT2Q9BYV1 514 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 WDCPQ9H6R7 721 aa14.79□□□□□ -0.04
USP3-204ENST00000540797 PPARGC1AQ9UBK2 798 aaKnown RBP14.79□□□□□ -0.04
USP3-204ENST00000540797 CASTOR2A6NHX0 329 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 H0Y626 953 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 ZNF197O14709 1029 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 HOXC6P09630 235 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 ETFBP38117 255 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 CYP24A1Q07973 514 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 ZNF280DQ6N043 979 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 SPATA18Q8TC71 538 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 SLC5A5Q92911 643 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 TRAIPQ9BWF2 469 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 FAM96AQ9H5X1 160 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 SNTG2Q9NY99 539 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 KANSL3Q9P2N6 904 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 PCDHAC2Q9Y5I4 1007 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 ORC6Q9Y5N6 252 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 MRFAP1Q9Y605 127 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 TBKBP1A7MCY6 615 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 CXCL8P10145 99 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 LHX1P48742 406 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 MAGOHP61326 146 aaKnown RBP14.78□□□□□ -0.04
USP3-204ENST00000540797 LBRQ14739 615 aaKnown RBP14.78□□□□□ -0.04
USP3-204ENST00000540797 SYTL3Q4VX76 610 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 FAM47EQ6ZV65 393 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 TMC7Q7Z402 723 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 TC2NQ8N9U0 490 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 BHMTQ93088 406 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 DDX27Q96GQ7 796 aaKnown RBP14.78□□□□□ -0.04
USP3-204ENST00000540797 PPP1R2P1Q96PQ5 205 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 IRX2Q9BZI1 471 aaPredicted RBP14.78□□□□□ -0.04
USP3-204ENST00000540797 FOXN3O00409 490 aaPredicted RBP14.78□□□□□ -0.04
USP3-204ENST00000540797 CST8O60676 142 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 PNMA6AP0CW24 399 aaPredicted RBP14.78□□□□□ -0.04
USP3-204ENST00000540797 MBL2P11226 248 aaPredicted RBP14.78□□□□□ -0.04
USP3-204ENST00000540797 EPHB2P29323 1055 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 RARRES1P49788 294 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 ELAVL2Q12926 359 aaKnown RBP14.78□□□□□ -0.04
USP3-204ENST00000540797 BYSLQ13895 437 aaKnown RBP14.78□□□□□ -0.04
USP3-204ENST00000540797 PTGISQ16647 500 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 RGMBQ6NW40 437 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 MTHFD1LQ6UB35 978 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 TRAPPC12Q8WVT3 735 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 SERPINI1Q99574 410 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 TSSK1BQ9BXA7 367 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 ALG6Q9Y672 507 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 CCDC78A2IDD5 438 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 ZNF185O15231 689 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 BRAFP15056 766 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 CLNS1AP54105 237 aaKnown RBP14.78□□□□□ -0.04
USP3-204ENST00000540797 OTOP1Q7RTM1 612 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 MIB1Q86YT6 1006 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 CYFIP2Q96F07 1278 aa14.78□□□□□ -0.04
USP3-204ENST00000540797 MCF2P10911 925 aa14.77□□□□□ -0.04
USP3-204ENST00000540797 BOLA3Q53S33 107 aa14.77□□□□□ -0.04
USP3-204ENST00000540797 MKL1Q969V6 931 aa14.77□□□□□ -0.04
USP3-204ENST00000540797 ELAC2Q9BQ52 826 aaKnown RBP14.77□□□□□ -0.04
USP3-204ENST00000540797 CHORDC1Q9UHD1 332 aaPredicted RBP14.77□□□□□ -0.04
USP3-204ENST00000540797 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.77□□□□□ -0.04
USP3-204ENST00000540797 KIF3CO14782 793 aa14.77□□□□□ -0.04
USP3-204ENST00000540797 SGPL1O95470 568 aa14.77□□□□□ -0.04
USP3-204ENST00000540797 POMCP01189 267 aa14.77□□□□□ -0.04
USP3-204ENST00000540797 KITP10721 976 aa14.77□□□□□ -0.04
USP3-204ENST00000540797 FGFR4P22455 802 aa14.77□□□□□ -0.04
USP3-204ENST00000540797 ZNF177Q13360 481 aaPredicted RBP14.77□□□□□ -0.04
USP3-204ENST00000540797 SCFD1Q8WVM8 642 aa14.77□□□□□ -0.04
USP3-204ENST00000540797 SLC7A5P2Q9GIP4 190 aa14.77□□□□□ -0.04
USP3-204ENST00000540797 AIPL1Q9NZN9 384 aa14.77□□□□□ -0.04
USP3-204ENST00000540797 ZNF212Q9UDV6 495 aa14.77□□□□□ -0.04
USP3-204ENST00000540797 FBXL5Q9UKA1 691 aa14.77□□□□□ -0.04
USP3-204ENST00000540797 FOXP2O15409 715 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 CKMP06732 381 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 ATICP31939 592 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 FSCBQ5H9T9 825 aa14.77□□□□□ -0.05
USP3-204ENST00000540797 FBXL16Q8N461 479 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms