RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 RTKNQ9BST9 563 aa13.01□□□□□ -0.33
CBX3P4-202ENST00000540428 ATXN3LQ9H3M9 355 aa13.01□□□□□ -0.33
CBX3P4-202ENST00000540428 ST6GALNAC4Q9H4F1 302 aa13.01□□□□□ -0.33
CBX3P4-202ENST00000540428 BLOC1S4Q9NUP1 217 aa13.01□□□□□ -0.33
CBX3P4-202ENST00000540428 CDV3Q9UKY7 258 aaKnown RBP13.01□□□□□ -0.33
CBX3P4-202ENST00000540428 SLC27A5Q9Y2P5 690 aa13.01□□□□□ -0.33
CBX3P4-202ENST00000540428 C2CD2Q9Y426 696 aa13.01□□□□□ -0.33
CBX3P4-202ENST00000540428 PDCD11Q14690 1871 aaKnown RBP13.01□□□□□ -0.33
CBX3P4-202ENST00000540428 SLC38A8A6NNN8 435 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 RETP07949 1114 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 NFICP08651 508 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 GABRR2P28476 465 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 CDC25CP30307 473 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 CTHP32929 405 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 LONP1P36776 959 aaKnown RBP13□□□□□ -0.33
CBX3P4-202ENST00000540428 KPNA1P52294 538 aaPredicted RBP13□□□□□ -0.33
CBX3P4-202ENST00000540428 PLCB2Q00722 1185 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 SATB1Q01826 763 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 VEPH1Q14D04 833 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 GPR158Q5T848 1215 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 SLC39A4Q6P5W5 647 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 METTL23Q86XA0 190 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 SYNPOQ8N3V7 929 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 OR10T2Q8NGX3 314 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 LRRC15Q8TF66 581 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 RAD54LQ92698 747 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 FAM212AQ96EL1 285 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 TMX3Q96JJ7 454 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 TMEM209Q96SK2 561 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 CCSER1Q9C0I3 900 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 ZCWPW1Q9H0M4 648 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 TASP1Q9H6P5 420 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 USP18Q9UMW8 372 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 STYXL1Q9Y6J8 313 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 DNAH14Q0VDD8 3507 aa13□□□□□ -0.33
CBX3P4-202ENST00000540428 SPECC1L-ADORA2AF8WAN1 911 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 TBCAO75347 108 aaKnown RBP12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 KRT18P05783 430 aaKnown RBP12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 PLCG1P19174 1290 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 HOXA6P31267 233 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 MCM2P49736 904 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 DHX8Q14562 1220 aaKnown RBP12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 MCM6Q14566 821 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 SLC39A12Q504Y0 691 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 STXBP5Q5T5C0 1151 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 LONP2Q86WA8 852 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 NT5DC4Q86YG4 428 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 THEM5Q8N1Q8 247 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 TTC9BQ8N6N2 239 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 FAM200AQ8TCP9 573 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 SPPL2BQ8TCT7 592 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 BPIFB1Q8TDL5 484 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 HVCN1Q96D96 273 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 LRRC3BQ96PB8 259 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 GCNAQ96QF7 691 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 PARD6AQ9NPB6 346 aa12.99□□□□□ -0.33
CBX3P4-202ENST00000540428 WDR87Q6ZQQ6 2873 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 K7ESF4 209 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 CYB561D2O14569 222 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 FOXD2O60548 495 aaPredicted RBP12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 SOAT2O75908 522 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 ATF6P18850 670 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 NMT1P30419 496 aaKnown RBP12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 SOX9P48436 509 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 TAF6P49848 677 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 CCINQ13939 588 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 SIM2Q14190 667 aaPredicted RBP12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 KARSQ15046 597 aaKnown RBP12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 PTPAQ15257 358 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 MGAT5BQ3V5L5 792 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 ADALQ6DHV7 355 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 TXNDC11Q6PKC3 985 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 PRR23BQ6ZRT6 265 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 BRAPQ7Z569 592 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 RASSF8Q8NHQ8 419 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 LARP4BQ92615 738 aaKnown RBP12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 SEPT5Q99719 369 aaPredicted RBP12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 ZHX3Q9H4I2 956 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 IL21Q9HBE4 155 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 THG1LQ9NWX6 298 aaKnown RBP12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 GTSE1Q9NYZ3 720 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 AGO2Q9UKV8 859 aaKnown RBP12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 SMC3Q9UQE7 1217 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 FRYLO94915 3013 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 TICRRQ7Z2Z1 1910 aa12.98□□□□□ -0.33
CBX3P4-202ENST00000540428 SOBPA7XYQ1 873 aa12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 CHURC1-FNTBB4DL54 471 aa12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 ANKRD63C9JTQ0 380 aa12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 PRAMEF12O95522 483 aa12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 DDIT3P35638 169 aa12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 FNTBP49356 437 aa12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 ACOT2P49753 483 aa12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 SPEM2Q0P670 501 aa12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 POSTNQ15063 836 aa12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 WDR44Q5JSH3 913 aa12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 LARP1BQ659C4 914 aaKnown RBP12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 DCP1BQ8IZD4 617 aaKnown RBP12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 KRI1Q8N9T8 703 aaKnown RBP12.97□□□□□ -0.33
CBX3P4-202ENST00000540428 NETO1Q8TDF5 533 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms