RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 CDC42EP1Q00587 391 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 P3H1Q32P28 736 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 SPDYCQ5MJ68 293 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 PNMA8AQ86V59 439 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-213ENST00000540338 FOXP3Q9BZS1 431 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 SEMA4AQ9H3S1 761 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 ERVK-5Q9HDB9 667 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 DCAF8L1A6NGE4 600 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 CSDE1O75534 798 aaKnown RBP11.38□□□□□ -0.59
CLIP1-213ENST00000540338 ASS1P00966 412 aaKnown RBP11.38□□□□□ -0.59
CLIP1-213ENST00000540338 CYP2C8P10632 490 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 NOMO3P69849 1222 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 MAMLD1Q13495 774 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 KYNUQ16719 465 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 ZBTB41Q5SVQ8 909 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 DLK2Q6UY11 383 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 PDIK1LQ8N165 341 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 ZNF473Q8WTR7 871 aaKnown RBP11.38□□□□□ -0.59
CLIP1-213ENST00000540338 NR2E1Q9Y466 385 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 BRWD3Q6RI45 1802 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 DYNC1LI2O43237 492 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-213ENST00000540338 GCLCP48506 637 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-213ENST00000540338 ADCY1Q08828 1119 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 SETDB1Q15047 1291 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 PHF13Q86YI8 300 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-213ENST00000540338 PYROXD1Q8WU10 500 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 ZNF516Q92618 1163 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 SMC6Q96SB8 1091 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 NCAPGQ9BPX3 1015 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 DCLK3Q9C098 648 aa11.38□□□□□ -0.59
CLIP1-213ENST00000540338 FHDC1Q9C0D6 1143 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-213ENST00000540338 H3BRB1 525 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 FSCN2O14926 492 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 STK10O94804 968 aaKnown RBP11.37□□□□□ -0.59
CLIP1-213ENST00000540338 PIGRP01833 764 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 VTNP04004 478 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 MCF2P10911 925 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 ALDH3A1P30838 453 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 GTF2A2P52657 109 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 IL9RQ01113 521 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 MCL1Q07820 350 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 STILQ15468 1287 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 DGKDQ16760 1214 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 PPP1R21Q6ZMI0 780 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 CHMP6Q96FZ7 201 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 RBM15Q96T37 977 aaKnown RBP eCLIP11.37□□□□□ -0.59
CLIP1-213ENST00000540338 TUT1Q9H6E5 874 aaKnown RBP11.37□□□□□ -0.59
CLIP1-213ENST00000540338 VTA1Q9NP79 307 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 A0A0G2JLL6 359 aaPredicted RBP11.37□□□□□ -0.59
CLIP1-213ENST00000540338 CAND2O75155 1236 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 PPFIA2O75334 1257 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 KRT10P13645 584 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 MAGEA9P43362 315 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 MNAT1P51948 309 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 ARL4CP56559 192 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 STAT4Q14765 748 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 CCDC38Q502W7 563 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 PRRT2Q7Z6L0 340 aaPredicted RBP11.37□□□□□ -0.59
CLIP1-213ENST00000540338 FAM149B1Q96BN6 582 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 PARK7Q99497 189 aaKnown RBP11.37□□□□□ -0.59
CLIP1-213ENST00000540338 NT5C1AQ9BXI3 368 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 LRRC19Q9H756 370 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 SPC25Q9HBM1 224 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 SNX9Q9Y5X1 595 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 ADAMTSL1Q8N6G6 1762 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 STRNO43815 780 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 EIF4BP23588 611 aaKnown RBP11.37□□□□□ -0.59
CLIP1-213ENST00000540338 SDC4P31431 198 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 LONRF1Q17RB8 773 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 BBS9Q3SYG4 887 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 LGSNQ5TDP6 509 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 C9orf72Q96LT7 481 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 MED10Q9BTT4 135 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 TNFSF13BQ9Y275 285 aa11.37□□□□□ -0.59
CLIP1-213ENST00000540338 RRN3P2A6NIE6 340 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 RPS6KA5O75582 802 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 ATG7O95352 703 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 FAM107AO95990 144 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 PDGFRAP16234 1089 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 ADORA2AP29274 412 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 GRM1Q13255 1194 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 KCTD19Q17RG1 926 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-213ENST00000540338 CTAGE3PQ8IX95 158 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 ZC3H15Q8WU90 426 aaKnown RBP11.36□□□□□ -0.59
CLIP1-213ENST00000540338 ASB7Q9H672 318 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 CYP3A43Q9HB55 503 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 CHST7Q9NS84 486 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 PDHXO00330 501 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 GJB6O95452 261 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 BRAFP15056 766 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 CHN1P15882 459 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 ATICP31939 592 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 RAP1GAPP47736 663 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 CDH6P55285 790 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 ORC1Q13415 861 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 FAM47CQ5HY64 1035 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 DPY19L2P1Q6NXN4 242 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 SRRM1Q8IYB3 904 aaKnown RBP11.36□□□□□ -0.59
CLIP1-213ENST00000540338 KATNAL2Q8IYT4 538 aa11.36□□□□□ -0.59
CLIP1-213ENST00000540338 CPB2Q96IY4 423 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms