RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 EPHB4P54760 987 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 GUCY2DQ02846 1103 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 MFSD10Q14728 455 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 CCL14Q16627 93 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 LIN9Q5TKA1 542 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 CPNE8Q86YQ8 564 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 C1orf127Q8N9H9 656 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 KAT2BQ92831 832 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 SLITRK6Q9H5Y7 841 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 ZFYVE28Q9HCC9 887 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 SIX4Q9UIU6 781 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 ANAPC7Q9UJX3 599 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 CITO14578 2027 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 GOLGA6L10A0A0M3HER8 536 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 MBLAC1A4D2B0 266 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-212ENST00000540304 SART1O43290 800 aaKnown RBP10.25□□□□□ -0.77
CLIP1-212ENST00000540304 ITGA4P13612 1032 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 MARCKSL1P49006 195 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 PEX5P50542 639 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 ZNF211Q13398 564 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-212ENST00000540304 KIZQ2M2Z5 673 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 SLC5A9Q2M3M2 681 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 SLC10A6Q3KNW5 377 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 C2CD6Q53TS8 623 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 ZNF667Q5HYK9 610 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 EMBQ6PCB8 327 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 SCARA5Q6ZMJ2 495 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 PHLDB2Q86SQ0 1253 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 MICAL1Q8TDZ2 1067 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 LENG1Q96BZ8 264 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-212ENST00000540304 ACAP3Q96P50 834 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 C11orf70Q9BRQ4 267 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 GCOM2Q9BZD3 368 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-212ENST00000540304 TRIM6Q9C030 488 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-212ENST00000540304 FAM49AQ9H0Q0 323 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-212ENST00000540304 DDX47Q9H0S4 455 aaKnown RBP10.25□□□□□ -0.77
CLIP1-212ENST00000540304 ADAMTS10Q9H324 1103 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 EPB41L5Q9HCM4 733 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 ADAM22Q9P0K1 906 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 SUN2Q9UH99 717 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 Q9Y3F1 56 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 PCDHA3Q9Y5H8 950 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 RALGAPA2Q2PPJ7 1873 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 MROH7Q68CQ1 1323 aa10.25□□□□□ -0.77
CLIP1-212ENST00000540304 SMIM35A0A1B0GVV1 85 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 ESYT3A0FGR9 886 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 TNPO2O14787 897 aaKnown RBP10.24□□□□□ -0.77
CLIP1-212ENST00000540304 LSM8O95777 96 aaKnown RBP10.24□□□□□ -0.77
CLIP1-212ENST00000540304 WEE2P0C1S8 567 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 HSPA6P17066 643 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 PAK2Q13177 524 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 TMEM132DQ14C87 1099 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 PPP2R5EQ16537 467 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 DCAF4L1Q3SXM0 396 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 SEL1L2Q5TEA6 688 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 HHATQ5VTY9 493 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 LRRC31Q6UY01 552 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 APBB1IPQ7Z5R6 666 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-212ENST00000540304 DRAXINQ8NBI3 349 aaPredicted RBP10.24□□□□□ -0.77
CLIP1-212ENST00000540304 BCO2Q9BYV7 579 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 AP5M1Q9H0R1 490 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 MRPL47Q9HD33 250 aaKnown RBP10.24□□□□□ -0.77
CLIP1-212ENST00000540304 NXF1Q9UBU9 619 aaKnown RBP10.24□□□□□ -0.77
CLIP1-212ENST00000540304 GJD2Q9UKL4 321 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 POLIQ9UNA4 740 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 C2CD2Q9Y426 696 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 HTTP42858 3142 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 GPR32O75388 356 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 ITGB3P05106 788 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 SETSIPP0DME0 302 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 CYP2C9P11712 490 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 OAS2P29728 719 aaKnown RBP10.24□□□□□ -0.77
CLIP1-212ENST00000540304 ATICP31939 592 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 GRM5P41594 1212 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 SLC1A1P43005 524 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 PSEN2P49810 448 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 TMEM62Q0P6H9 643 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 SREBF2Q12772 1141 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 PCBP1Q15365 356 aaKnown RBP eCLIP10.24□□□□□ -0.77
CLIP1-212ENST00000540304 ZNF394Q53GI3 561 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 LLGL2Q6P1M3 1020 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 NT5DC4Q86YG4 428 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 CAVIN3Q969G5 261 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 SPATS2LQ9NUQ6 558 aaKnown RBP10.24□□□□□ -0.77
CLIP1-212ENST00000540304 HPCAL4Q9UM19 191 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 SCINQ9Y6U3 715 aa10.24□□□□□ -0.77
CLIP1-212ENST00000540304 MYO1FO00160 1098 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 HAS3O00219 553 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 IGHA2P01877 340 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 FGFR4P22455 802 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 MMP8P22894 467 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 CARSP49589 748 aaKnown RBP10.23□□□□□ -0.77
CLIP1-212ENST00000540304 PTP4A2Q12974 167 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 CRHR2Q13324 411 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 NNTQ13423 1086 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 WDR72Q3MJ13 1102 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 PLEKHA7Q6IQ23 1121 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 SND1Q7KZF4 910 aaKnown RBP eCLIP10.23□□□□□ -0.77
CLIP1-212ENST00000540304 MAATS1Q7Z4T9 603 aa10.23□□□□□ -0.77
CLIP1-212ENST00000540304 ADAT2Q7Z6V5 191 aaKnown RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms