RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 MYO6Q9UM54 1294 aa20.23■□□□□ 0.83
TNFRSF1A-213ENST00000540022 REV3LO60673 3130 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 GOLGA6L6A8MZA4 724 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 M0QZQ0 153 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 SOX5P35711 763 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 STAT1P42224 750 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 WSCD1Q658N2 575 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 PPP2R2DQ66LE6 453 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 PDCL2Q8N4E4 241 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 TOP6BLQ8N6T0 577 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 APPL2Q8NEU8 664 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 OR8K1Q8NGG5 319 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 KBTBD7Q8WVZ9 684 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 DNAJC7Q99615 494 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 PRDM12Q9H4Q4 367 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 TIMM13Q9Y5L4 95 aaPredicted RBP20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 PRRC2BQ5JSZ5 2229 aaKnown RBP20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 TACC1O75410 805 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 USP8P40818 1118 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 FUT10Q6P4F1 479 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 FAM71AQ8IYT1 594 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 SLC39A11Q8N1S5 342 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 CLP1Q92989 425 aaKnown RBP20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 IGSF21Q96ID5 467 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 GPR62Q9BZJ7 368 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 CNTN6Q9UQ52 1028 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 NME7Q9Y5B8 376 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 PCDHB4Q9Y5E5 795 aa20.22■□□□□ 0.83
TNFRSF1A-213ENST00000540022 SCN1AP35498 2009 aa20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 CILPO75339 1184 aa20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 GFPT2O94808 682 aa20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 KRT5P13647 590 aa20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 GSDMDP57764 484 aa20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 YWHAEP62258 255 aaKnown RBP20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 TAP1Q03518 808 aa20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 INCA1Q0VD86 236 aa20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 SFMBT2Q5VUG0 894 aa20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 TMEM270Q6UE05 265 aa20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 OSTM1Q86WC4 334 aa20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 ADGRF2Q8IZF7 708 aa20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 MAFAQ8NHW3 353 aaPredicted RBP20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 WHAMMQ8TF30 809 aa20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 C17orf80Q9BSJ5 609 aa20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 NUCKS1Q9H1E3 243 aaKnown RBP20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 AIPL1Q9NZN9 384 aa20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 HMGXB4Q9UGU5 601 aa20.21■□□□□ 0.83
TNFRSF1A-213ENST00000540022 TRAPPC3O43617 180 aa20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 EFEMP2O95967 443 aa20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 CYP11A1P05108 521 aa20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 FAM163BP0C2L3 166 aa20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 ODC1P11926 461 aa20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 HNRNPH3P31942 346 aaKnown RBP20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 CLCN1P35523 988 aa20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 ARID5AQ03989 594 aa20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 ZNF394Q53GI3 561 aa20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 RBBP8NLQ8NC74 664 aaPredicted RBP20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 OR6B3Q8NGW1 331 aa20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 SYN2Q92777 582 aaPredicted RBP20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 TWNKQ96RR1 684 aa20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 FAM124BQ9H5Z6 455 aaPredicted RBP20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 CERS4Q9HA82 394 aa20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 MTUS1Q9ULD2 1270 aa20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 BARX2Q9UMQ3 279 aaPredicted RBP20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 PCDHB8Q9UN66 801 aa20.2■□□□□ 0.82
TNFRSF1A-213ENST00000540022 SF3B1O75533 1304 aaKnown RBP eCLIP20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 GABRDO14764 452 aa20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 CYP26A1O43174 497 aa20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 HCRTO43612 131 aa20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 PTMAP06454 111 aaKnown RBP20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 WARSP23381 471 aaKnown RBP20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 TKTP29401 623 aaKnown RBP20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 ZNF132P52740 706 aa20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 NDST1P52848 882 aa20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 ADGRE1Q14246 886 aa20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 FAM171A1Q5VUB5 890 aa20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 WDR59Q6PJI9 974 aa20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 IRF2BP2Q7Z5L9 587 aa20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 TMEM86AQ8N2M4 240 aa20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 VN1R3Q9BXE9 311 aa20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 ACP6Q9NPH0 428 aa20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 AAASQ9NRG9 546 aa20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 SPG21Q9NZD8 308 aa20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 NLRC5Q86WI3 1866 aa20.19■□□□□ 0.82
TNFRSF1A-213ENST00000540022 CARNS1A5YM72 827 aa20.18■□□□□ 0.82
TNFRSF1A-213ENST00000540022 VCANP13611 3396 aa20.18■□□□□ 0.82
TNFRSF1A-213ENST00000540022 FERP16591 822 aa20.18■□□□□ 0.82
TNFRSF1A-213ENST00000540022 TYMPP19971 482 aa20.18■□□□□ 0.82
TNFRSF1A-213ENST00000540022 LMO2P25791 158 aa20.18■□□□□ 0.82
TNFRSF1A-213ENST00000540022 ORC1Q13415 861 aa20.18■□□□□ 0.82
TNFRSF1A-213ENST00000540022 ASIC2Q16515 512 aa20.18■□□□□ 0.82
TNFRSF1A-213ENST00000540022 TAS1R1Q7RTX1 841 aa20.18■□□□□ 0.82
TNFRSF1A-213ENST00000540022 RNF168Q8IYW5 571 aaPredicted RBP20.18■□□□□ 0.82
TNFRSF1A-213ENST00000540022 TTC39CQ8N584 583 aa20.18■□□□□ 0.82
TNFRSF1A-213ENST00000540022 PANX2Q96RD6 677 aa20.18■□□□□ 0.82
TNFRSF1A-213ENST00000540022 GAS2L1Q99501 681 aaPredicted RBP20.18■□□□□ 0.82
TNFRSF1A-213ENST00000540022 ELOVL4Q9GZR5 314 aa20.18■□□□□ 0.82
TNFRSF1A-213ENST00000540022 SNX25Q9H3E2 840 aa20.18■□□□□ 0.82
TNFRSF1A-213ENST00000540022 PCDHB12Q9Y5F1 795 aa20.18■□□□□ 0.82
TNFRSF1A-213ENST00000540022 ARHGEF37A1IGU5 675 aa20.17■□□□□ 0.82
TNFRSF1A-213ENST00000540022 A8MXQ7 604 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms