RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 CACNB1Q02641 598 aaPredicted RBP17.07■□□□□ 0.32
CHMP4A-207ENST00000533523 LRRC32Q14392 662 aa17.07■□□□□ 0.32
CHMP4A-207ENST00000533523 STXBP5Q5T5C0 1151 aa17.07■□□□□ 0.32
CHMP4A-207ENST00000533523 ATL3Q6DD88 541 aa17.07■□□□□ 0.32
CHMP4A-207ENST00000533523 DSTYKQ6XUX3 929 aa17.07■□□□□ 0.32
CHMP4A-207ENST00000533523 TMC8Q8IU68 726 aa17.07■□□□□ 0.32
CHMP4A-207ENST00000533523 GPIHBP1Q8IV16 184 aa17.07■□□□□ 0.32
CHMP4A-207ENST00000533523 BEST2Q8NFU1 509 aa17.07■□□□□ 0.32
CHMP4A-207ENST00000533523 FAM200AQ8TCP9 573 aa17.07■□□□□ 0.32
CHMP4A-207ENST00000533523 E2F7Q96AV8 911 aa17.07■□□□□ 0.32
CHMP4A-207ENST00000533523 RSPRY1Q96DX4 576 aa17.07■□□□□ 0.32
CHMP4A-207ENST00000533523 RTKNQ9BST9 563 aa17.07■□□□□ 0.32
CHMP4A-207ENST00000533523 CRISPLD1Q9H336 500 aa17.07■□□□□ 0.32
CHMP4A-207ENST00000533523 RBM12Q9NTZ6 932 aaKnown RBP17.07■□□□□ 0.32
CHMP4A-207ENST00000533523 TFIP11Q9UBB9 837 aaKnown RBP17.07■□□□□ 0.32
CHMP4A-207ENST00000533523 UBQLN1Q9UMX0 589 aaKnown RBP17.07■□□□□ 0.32
CHMP4A-207ENST00000533523 NPHP3-ACAD11A0A0J9YXS1 232 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 OR6C75A6NL08 312 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 ARNTLO00327 626 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 CHRNB1P11230 501 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 TNFSF9P41273 254 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 ALDH1A3P47895 512 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 CXCL12P48061 93 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 LIG4P49917 911 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 DUSP4Q13115 394 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 TMEM119Q4V9L6 283 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 PPM1JQ5JR12 505 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 Q6ZS52 159 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 TTC9BQ8N6N2 239 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 CELF5Q8N6W0 485 aaKnown RBP17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 RASSF8Q8NHQ8 419 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 MSANTD3Q96H12 275 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 PNMA5Q96PV4 448 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 USP28Q96RU2 1077 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 GPR88Q9GZN0 384 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 HAPLN2Q9GZV7 340 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 DNAJC25Q9H1X3 360 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 PLEKHA5Q9HAU0 1116 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 KCND2Q9NZV8 630 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 KCNG1Q9UIX4 513 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 EML5Q05BV3 1969 aa17.06■□□□□ 0.32
CHMP4A-207ENST00000533523 TTC26A0AVF1 554 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 MTMR11A4FU01 709 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 CHURC1-FNTBB4DL54 471 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 DPYSL4O14531 572 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 PPEF2O14830 753 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 HNRNPDLO14979 420 aaKnown RBP17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 CHADO15335 359 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 XPOTO43592 962 aaKnown RBP17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 GDF9O60383 454 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 SOAT2O75908 522 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 OAZ2O95190 189 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 FNTBP49356 437 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 AARSP49588 968 aaKnown RBP eCLIP17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 DMWDQ09019 674 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 SIM2Q14190 667 aaPredicted RBP17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 GAS6Q14393 721 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 HEATR6Q6AI08 1181 aaKnown RBP17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 OVOS1Q6IE37 1185 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 MAMSTRQ6ZN01 415 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 SPEM1Q8N4L4 309 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 TTC8Q8TAM2 541 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 NTPCRQ9BSD7 190 aaKnown RBP17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 OXCT2Q9BYC2 517 aaPredicted RBP17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 C8orf33Q9H7E9 229 aaPredicted RBP17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 CLIC4Q9Y696 253 aa17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 MORC2Q9Y6X9 1032 aaPredicted RBP17.05■□□□□ 0.32
CHMP4A-207ENST00000533523 GCN1Q92616 2671 aaKnown RBP17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 LACTBL1A8MY62 500 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 H0YCG3 227 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 K7ENM7 598 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 RETP07949 1114 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 PLA2G4BP0C869 781 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 ODC1P11926 461 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 SLC12A3P55017 1021 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 NCKAP1LP55160 1127 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 CEBPZQ03701 1054 aaKnown RBP17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 FCHO2Q0JRZ9 810 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 SRSF5Q13243 272 aaKnown RBP17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 GPR17Q13304 367 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 PTPAQ15257 358 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 ENOX2Q16206 610 aaKnown RBP17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 ARHGAP15Q53QZ3 475 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 GPR158Q5T848 1215 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 C1orf228Q6PIY5 440 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 ARID3BQ8IVW6 561 aaPredicted RBP17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 SYT2Q8N9I0 419 aaPredicted RBP17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 ATAD1Q8NBU5 361 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 FAM212AQ96EL1 285 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 ZFYVE19Q96K21 471 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 TMEM209Q96SK2 561 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 LRRC3Q9BY71 257 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 ATXN3LQ9H3M9 355 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 RPF1Q9H9Y2 349 aaKnown RBP17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 GDPD2Q9HCC8 539 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 CFAP45Q9UL16 551 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 SLC27A5Q9Y2P5 690 aa17.04■□□□□ 0.32
CHMP4A-207ENST00000533523 SPECC1L-ADORA2AF8WAN1 911 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms