RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PCDHGA2Q9Y5H1 932 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 STYXL1Q9Y6J8 313 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 WDR87Q6ZQQ6 2873 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 NOTCH4Q99466 2003 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 MYMKA6NI61 221 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 SOAT2O75908 522 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 VNN2O95498 520 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 CYP11A1P05108 521 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 GABRR2P28476 465 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 PNPLA4P41247 253 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 SMARCB1Q12824 385 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 RESTQ13127 1097 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 ALCAMQ13740 583 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 L1TD1Q5T7N2 865 aaKnown RBP15.91■□□□□ 0.14
VPS28-215ENST00000531924 GPR158Q5T848 1215 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 NT5DC4Q86YG4 428 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 KIAA2013Q8IYS2 634 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 DCP1BQ8IZD4 617 aaKnown RBP15.91■□□□□ 0.14
VPS28-215ENST00000531924 OR10T2Q8NGX3 314 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 C2orf15Q8WU43 125 aaKnown RBP15.91■□□□□ 0.14
VPS28-215ENST00000531924 CACTINQ8WUQ7 758 aaKnown RBP15.91■□□□□ 0.14
VPS28-215ENST00000531924 SECISBP2LQ93073 1101 aaKnown RBP15.91■□□□□ 0.14
VPS28-215ENST00000531924 PSMG2Q969U7 264 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 TMEM209Q96SK2 561 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 DNAJC25Q9H1X3 360 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 FOXD4L1Q9NU39 408 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 ZSCAN32Q9NX65 697 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 NCDNQ9UBB6 729 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 FAM186AA6NE01 2351 aa15.91■□□□□ 0.14
VPS28-215ENST00000531924 KPNA7A9QM74 516 aa15.9■□□□□ 0.14
VPS28-215ENST00000531924 NRG2O14511 850 aaPredicted RBP15.9■□□□□ 0.14
VPS28-215ENST00000531924 LDHAP00338 332 aaKnown RBP15.9■□□□□ 0.14
VPS28-215ENST00000531924 CDR1P51861 262 aa15.9■□□□□ 0.14
VPS28-215ENST00000531924 TSPY1Q01534 308 aa15.9■□□□□ 0.14
VPS28-215ENST00000531924 MTAPQ13126 283 aa15.9■□□□□ 0.14
VPS28-215ENST00000531924 STK38Q15208 465 aa15.9■□□□□ 0.14
VPS28-215ENST00000531924 WSCD1Q658N2 575 aa15.9■□□□□ 0.14
VPS28-215ENST00000531924 C1orf228Q6PIY5 440 aa15.9■□□□□ 0.14
VPS28-215ENST00000531924 STXBP4Q6ZWJ1 553 aa15.9■□□□□ 0.14
VPS28-215ENST00000531924 TMC8Q8IU68 726 aa15.9■□□□□ 0.14
VPS28-215ENST00000531924 GPIHBP1Q8IV16 184 aa15.9■□□□□ 0.14
VPS28-215ENST00000531924 ARID3BQ8IVW6 561 aaPredicted RBP15.9■□□□□ 0.14
VPS28-215ENST00000531924 TTC9BQ8N6N2 239 aa15.9■□□□□ 0.14
VPS28-215ENST00000531924 MSANTD3Q96H12 275 aa15.9■□□□□ 0.14
VPS28-215ENST00000531924 INTS4Q96HW7 963 aaKnown RBP15.9■□□□□ 0.14
VPS28-215ENST00000531924 ZCWPW1Q9H0M4 648 aa15.9■□□□□ 0.14
VPS28-215ENST00000531924 IKZF4Q9H2S9 585 aa15.9■□□□□ 0.14
VPS28-215ENST00000531924 ZSCAN16Q9H4T2 348 aaPredicted RBP15.9■□□□□ 0.14
VPS28-215ENST00000531924 LMAN1LQ9HAT1 526 aa15.9■□□□□ 0.14
VPS28-215ENST00000531924 PANK4Q9NVE7 773 aa15.9■□□□□ 0.14
VPS28-215ENST00000531924 ABI2Q9NYB9 513 aaPredicted RBP15.9■□□□□ 0.14
VPS28-215ENST00000531924 RBAKQ9NYW8 714 aaPredicted RBP15.9■□□□□ 0.14
VPS28-215ENST00000531924 CHADO15335 359 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 HUS1O60921 280 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 CCNE1P24864 410 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 CDC25CP30307 473 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 ADSSP30520 456 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 NRLP54845 237 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 LRRC32Q14392 662 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 SLC39A14Q15043 492 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 TSSK4Q6SA08 328 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 CCDC65Q8IXS2 484 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 SPPL2BQ8TCT7 592 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 GIPC2Q8TF65 315 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 SAAL1Q96ER3 474 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 LPIN3Q9BQK8 851 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 IER2Q9BTL4 223 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 LRRC3Q9BY71 257 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 FAM126AQ9BYI3 521 aaPredicted RBP15.89■□□□□ 0.13
VPS28-215ENST00000531924 LRRC27Q9C0I9 530 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 C8orf33Q9H7E9 229 aaPredicted RBP15.89■□□□□ 0.13
VPS28-215ENST00000531924 TMEM206Q9H813 350 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 OLFML3Q9NRN5 406 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 THG1LQ9NWX6 298 aaKnown RBP15.89■□□□□ 0.13
VPS28-215ENST00000531924 AGAP1Q9UPQ3 857 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 PCDHB5Q9Y5E4 795 aa15.89■□□□□ 0.13
VPS28-215ENST00000531924 PDCD11Q14690 1871 aaKnown RBP15.88■□□□□ 0.13
VPS28-215ENST00000531924 PPP1R37O75864 691 aa15.88■□□□□ 0.13
VPS28-215ENST00000531924 KRT19P08727 400 aa15.88■□□□□ 0.13
VPS28-215ENST00000531924 GARTP22102 1010 aa15.88■□□□□ 0.13
VPS28-215ENST00000531924 POLR2BP30876 1174 aaKnown RBP15.88■□□□□ 0.13
VPS28-215ENST00000531924 KCNA1Q09470 495 aa15.88■□□□□ 0.13
VPS28-215ENST00000531924 ARHGAP29Q52LW3 1261 aa15.88■□□□□ 0.13
VPS28-215ENST00000531924 STXBP5Q5T5C0 1151 aa15.88■□□□□ 0.13
VPS28-215ENST00000531924 CRELD2Q6UXH1 353 aaPredicted RBP15.88■□□□□ 0.13
VPS28-215ENST00000531924 GAREM2Q75VX8 874 aa15.88■□□□□ 0.13
VPS28-215ENST00000531924 EFCAB13Q8IY85 973 aa15.88■□□□□ 0.13
VPS28-215ENST00000531924 PDILTQ8N807 584 aa15.88■□□□□ 0.13
VPS28-215ENST00000531924 DNAJC19Q96DA6 116 aa15.88■□□□□ 0.13
VPS28-215ENST00000531924 USP28Q96RU2 1077 aa15.88■□□□□ 0.13
VPS28-215ENST00000531924 CHRDQ9H2X0 955 aa15.88■□□□□ 0.13
VPS28-215ENST00000531924 TASP1Q9H6P5 420 aa15.88■□□□□ 0.13
VPS28-215ENST00000531924 COL4A3Q01955 1670 aa15.88■□□□□ 0.13
VPS28-215ENST00000531924 GOLGA8IPA6NC78 632 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 GOLGA8JA6NMD2 632 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 SLC38A8A6NNN8 435 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 STX6O43752 255 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 EXTL3O43909 919 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 ITGB3P05106 788 aa15.87■□□□□ 0.13
VPS28-215ENST00000531924 CCR3P51677 355 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms