RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 STXBP5Q5T5C0 1151 aa12.29□□□□□ -0.44
VPS28-214ENST00000531032 SLFN12LQ6IEE8 588 aa12.29□□□□□ -0.44
VPS28-214ENST00000531032 DNAJB7Q7Z6W7 309 aaPredicted RBP12.29□□□□□ -0.44
VPS28-214ENST00000531032 ARID3BQ8IVW6 561 aaPredicted RBP12.29□□□□□ -0.44
VPS28-214ENST00000531032 ZCWPW1Q9H0M4 648 aa12.29□□□□□ -0.44
VPS28-214ENST00000531032 NCDNQ9UBB6 729 aa12.29□□□□□ -0.44
VPS28-214ENST00000531032 DSEQ9UL01 958 aa12.29□□□□□ -0.44
VPS28-214ENST00000531032 SMG5Q9UPR3 1016 aaKnown RBP12.29□□□□□ -0.44
VPS28-214ENST00000531032 PPP1R37O75864 691 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 SOAT2O75908 522 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 CCNE1P24864 410 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 TUFMP49411 452 aaKnown RBP12.28□□□□□ -0.44
VPS28-214ENST00000531032 CCR3P51677 355 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 PPP2R5DQ14738 602 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 PTPAQ15257 358 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 ADALQ6DHV7 355 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 C1orf228Q6PIY5 440 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 CRELD2Q6UXH1 353 aaPredicted RBP12.28□□□□□ -0.44
VPS28-214ENST00000531032 ZNF720Q7Z2F6 126 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 ITIH5Q86UX2 942 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 YAF2Q8IY57 180 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 KRI1Q8N9T8 703 aaKnown RBP12.28□□□□□ -0.44
VPS28-214ENST00000531032 CSGALNACT1Q8TDX6 532 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 HVCN1Q96D96 273 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 EPSTI1Q96J88 318 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 STRA6Q9BX79 667 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 LMAN1LQ9HAT1 526 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 OBP2AQ9NY56 170 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 DLL3Q9NYJ7 618 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 STK17AQ9UEE5 414 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 AGO2Q9UKV8 859 aaKnown RBP12.28□□□□□ -0.44
VPS28-214ENST00000531032 GTF3C3Q9Y5Q9 886 aa12.28□□□□□ -0.44
VPS28-214ENST00000531032 TCHHQ07283 1943 aa12.27□□□□□ -0.44
VPS28-214ENST00000531032 CYB561D2O14569 222 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 ATF6P18850 670 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 GABRR2P28476 465 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 WEE1P30291 646 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 ADSSP30520 456 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 TAF6P49848 677 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 NRLP54845 237 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 SMARCB1Q12824 385 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 CUL4AQ13619 759 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 SLC39A12Q504Y0 691 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 USP49Q70CQ1 688 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 DGLUCYQ7Z3D6 616 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 SFR1Q86XK3 245 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 EFCAB13Q8IY85 973 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 GPR161Q8N6U8 529 aaKnown RBP12.27□□□□□ -0.45
VPS28-214ENST00000531032 C2orf15Q8WU43 125 aaKnown RBP12.27□□□□□ -0.45
VPS28-214ENST00000531032 SECISBP2LQ93073 1101 aaKnown RBP12.27□□□□□ -0.45
VPS28-214ENST00000531032 LRRC3BQ96PB8 259 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 SEPT5Q99719 369 aaPredicted RBP12.27□□□□□ -0.45
VPS28-214ENST00000531032 LPIN3Q9BQK8 851 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 PYM1Q9BRP8 204 aaKnown RBP12.27□□□□□ -0.45
VPS28-214ENST00000531032 IKZF4Q9H2S9 585 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 ATXN3LQ9H3M9 355 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 C8orf33Q9H7E9 229 aaPredicted RBP12.27□□□□□ -0.45
VPS28-214ENST00000531032 DPP3Q9NY33 737 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 SEL1LQ9UBV2 794 aa12.27□□□□□ -0.45
VPS28-214ENST00000531032 KIF26AQ9ULI4 1882 aaPredicted RBP12.27□□□□□ -0.45
VPS28-214ENST00000531032 MYBPHLA2RUH7 354 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 SLC38A8A6NNN8 435 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 IL18RAPO95256 599 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 PRAMEF12O95522 483 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 CDC25CP30307 473 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 CTHP32929 405 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 SOX9P48436 509 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 LRRC32Q14392 662 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 GAS6Q14393 721 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 VEPH1Q14D04 833 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 POSTNQ15063 836 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 MGAT5BQ3V5L5 792 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 ARHGAP29Q52LW3 1261 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 ARHGAP15Q53QZ3 475 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 WDR44Q5JSH3 913 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 GPR158Q5T848 1215 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 WSCD1Q658N2 575 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 DYMQ7RTS9 669 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 LRRTM3Q86VH5 581 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 METTL23Q86XA0 190 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 NT5DC4Q86YG4 428 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 SPEM1Q8N4L4 309 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 SPPL2BQ8TCT7 592 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 POMGNT1Q8WZA1 660 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 TASP1Q9H6P5 420 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 IL21Q9HBE4 155 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 CCDC39Q9UFE4 941 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 FBXO2Q9UK22 296 aaPredicted RBP12.26□□□□□ -0.45
VPS28-214ENST00000531032 SRPRBQ9Y5M8 271 aaKnown RBP12.26□□□□□ -0.45
VPS28-214ENST00000531032 CLIC4Q9Y696 253 aa12.26□□□□□ -0.45
VPS28-214ENST00000531032 DENND4CQ5VZ89 1909 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 MED19A0JLT2 244 aaPredicted RBP12.25□□□□□ -0.45
VPS28-214ENST00000531032 VPS37CA5D8V6 355 aaPredicted RBP12.25□□□□□ -0.45
VPS28-214ENST00000531032 MYMKA6NI61 221 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 KPNA7A9QM74 516 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 SPECC1L-ADORA2AF8WAN1 911 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 DPYSL4O14531 572 aa12.25□□□□□ -0.45
VPS28-214ENST00000531032 PAPSS2O95340 614 aaPredicted RBP12.25□□□□□ -0.45
VPS28-214ENST00000531032 HAPLN1P10915 354 aaPredicted RBP12.25□□□□□ -0.45
VPS28-214ENST00000531032 PDCP20941 246 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms