RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 CDR2Q01850 454 aa17.08■□□□□ 0.32
SQSTM1-213ENST00000510187 PTPN11Q06124 597 aaPredicted RBP17.08■□□□□ 0.32
SQSTM1-213ENST00000510187 ZDHHC24Q6UX98 284 aa17.08■□□□□ 0.32
SQSTM1-213ENST00000510187 ENOSF1Q7L5Y1 443 aa17.08■□□□□ 0.32
SQSTM1-213ENST00000510187 NME8Q8N427 588 aa17.08■□□□□ 0.32
SQSTM1-213ENST00000510187 C12orf50Q8NA57 414 aaPredicted RBP17.08■□□□□ 0.32
SQSTM1-213ENST00000510187 FBXL18Q96ME1 805 aa17.08■□□□□ 0.32
SQSTM1-213ENST00000510187 MINDY3Q9H8M7 445 aa17.08■□□□□ 0.32
SQSTM1-213ENST00000510187 MTRF1LQ9UGC7 380 aaKnown RBP17.08■□□□□ 0.32
SQSTM1-213ENST00000510187 ANKRD63C9JTQ0 380 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 E7EVH7 732 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 GPR32O75388 356 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 PRKCBP05771 671 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 FNTAP49354 379 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 PDE6CP51160 858 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 FMO1Q01740 532 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 MBTD1Q05BQ5 628 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 ODF2Q5BJF6 829 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 SERINC5Q86VE9 423 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 PACS2Q86VP3 889 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 IFNLR1Q8IU57 520 aaPredicted RBP17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 OTUD6BQ8N6M0 293 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 ZNF564Q8TBZ8 553 aaPredicted RBP17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 PARD3BQ8TEW8 1205 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 KRT35Q92764 455 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 MAGOHBQ96A72 148 aaKnown RBP17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 CENPTQ96BT3 561 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 PGM2Q96G03 612 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 MFSD14AQ96MC6 490 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 NT5C1BQ96P26 610 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 TMEM109Q9BVC6 243 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 ADAMTS10Q9H324 1103 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 NOVA2Q9UNW9 492 aaKnown RBP17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 ATP8A1Q9Y2Q0 1164 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 PCDHA3Q9Y5H8 950 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 SIP14410 1827 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 C5orf60A6NFR6 353 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 ZC3H11AO75152 810 aaKnown RBP eCLIP17.07■□□□□ 0.322e-14■■■■□ 19.8
SQSTM1-213ENST00000510187 CSDE1O75534 798 aaKnown RBP17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 FSBPO95073 299 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 USP8P40818 1118 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 BYSLQ13895 437 aaKnown RBP17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 MESDQ14696 234 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 DENND2CQ68D51 928 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 SLC39A4Q6P5W5 647 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 RSPH3Q86UC2 560 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 MICALL1Q8N3F8 863 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 PPM1KQ8N3J5 372 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 HELQQ8TDG4 1101 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 KAT5Q92993 513 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 TARS2Q9BW92 718 aaKnown RBP17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 PLVAPQ9BX97 442 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 MRPL4Q9BYD3 311 aaKnown RBP17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 TRIM31Q9BZY9 425 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 CRISPLD2Q9H0B8 497 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 EPB41L4BQ9H329 900 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 FZD8Q9H461 694 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 TRMT13Q9NUP7 481 aaKnown RBP17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 GRHL1Q9NZI5 618 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 NOD1Q9Y239 953 aa17.07■□□□□ 0.32
SQSTM1-213ENST00000510187 TRIP12Q14669 1992 aaPredicted RBP17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 CYP26A1O43174 497 aa17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 PIGRP01833 764 aa17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 EDN1P05305 212 aa17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 IQCF3P0C7M6 154 aa17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 CYP11B1P15538 503 aa17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 ADSSP30520 456 aa17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 MAGOHP61326 146 aaKnown RBP17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 SLMAPQ14BN4 828 aa17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 SLC13A5Q86YT5 568 aaPredicted RBP17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 CBWD2Q8IUF1 395 aa17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 FBXL13Q8NEE6 735 aa17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 POMGNT1Q8WZA1 660 aa17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 SEMA4DQ92854 862 aa17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 SLCO2A1Q92959 643 aa17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 C18orf8Q96DM3 657 aa17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 CYFIP2Q96F07 1278 aa17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 OSMRQ99650 979 aa17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 NUP85Q9BW27 656 aa17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 GCOM2Q9BZD3 368 aaPredicted RBP17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 PRMT7Q9NVM4 692 aaPredicted RBP17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 BCCIPQ9P287 314 aaKnown RBP eCLIP17.06■□□□□ 0.32
SQSTM1-213ENST00000510187 TMEM110-MUSTN1A8MSY1 372 aa17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 ACKR2O00590 384 aa17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 SPOPO43791 374 aa17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 MARCKSL1P49006 195 aa17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 LIG3P49916 1009 aa17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 SEC24CP53992 1094 aa17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 RWDD2BP57060 319 aa17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 TMEM132AQ24JP5 1023 aa17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 ZPBP2Q6X784 338 aa17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 ADAT2Q7Z6V5 191 aaKnown RBP17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 SLC47A2Q86VL8 602 aa17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 SLC43A3Q8NBI5 491 aa17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 ZSWIM2Q8NEG5 633 aa17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 WNT8BQ93098 351 aa17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 ZNF653Q96CK0 615 aa17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 CDHR5Q9HBB8 845 aa17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 SNX24Q9Y343 169 aa17.05■□□□□ 0.32
SQSTM1-213ENST00000510187 TTLL13PA6NNM8 815 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms