RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 CCDC174Q6PII3 467 aa5.31□□□□□ -1.56
NUP54-206ENST00000508465 PRPF38AQ8NAV1 312 aaKnown RBP5.31□□□□□ -1.56
NUP54-206ENST00000508465 TRPV1Q8NER1 839 aa5.31□□□□□ -1.56
NUP54-206ENST00000508465 U2AF1L4Q8WU68 220 aaKnown RBP5.31□□□□□ -1.56
NUP54-206ENST00000508465 ZG16BQ96DA0 208 aa5.31□□□□□ -1.56
NUP54-206ENST00000508465 CCDC136Q96JN2 1154 aa5.31□□□□□ -1.56
NUP54-206ENST00000508465 SLF1Q9BQI6 1058 aa5.31□□□□□ -1.56
NUP54-206ENST00000508465 TMEM47Q9BQJ4 181 aa5.31□□□□□ -1.56
NUP54-206ENST00000508465 EPN3Q9H201 632 aa5.31□□□□□ -1.56
NUP54-206ENST00000508465 MSL2Q9HCI7 577 aa5.31□□□□□ -1.56
NUP54-206ENST00000508465 RAVER2Q9HCJ3 691 aaKnown RBP5.31□□□□□ -1.56
NUP54-206ENST00000508465 HOMER2Q9NSB8 354 aa5.31□□□□□ -1.56
NUP54-206ENST00000508465 AURKAIP1Q9NWT8 199 aaPredicted RBP5.31□□□□□ -1.56
NUP54-206ENST00000508465 DSEQ9UL01 958 aa5.31□□□□□ -1.56
NUP54-206ENST00000508465 ADAMTS5Q9UNA0 930 aa5.31□□□□□ -1.56
NUP54-206ENST00000508465 INPP5FQ9Y2H2 1132 aa5.31□□□□□ -1.56
NUP54-206ENST00000508465 CTDP1Q9Y5B0 961 aaPredicted RBP5.31□□□□□ -1.56
NUP54-206ENST00000508465 KIAA0100Q14667 2235 aaKnown RBP5.31□□□□□ -1.56
NUP54-206ENST00000508465 LAMA2P24043 3122 aaKnown RBP5.3□□□□□ -1.56
NUP54-206ENST00000508465 NEDD4P46934 1319 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 FRMPD2Q68DX3 1309 aaPredicted RBP5.3□□□□□ -1.56
NUP54-206ENST00000508465 LOC285556D6RIA3 1793 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 SMAD7O15105 426 aaKnown RBP5.3□□□□□ -1.56
NUP54-206ENST00000508465 STRNO43815 780 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 LTFP02788 710 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 HMGCRP04035 888 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 FGRP09769 529 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 GOLGA8HP0CJ92 632 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 FCER1AP12319 257 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 DNAJA1P31689 397 aaKnown RBP5.3□□□□□ -1.56
NUP54-206ENST00000508465 SLC1A4P43007 532 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 TOP3AQ13472 1001 aaPredicted RBP5.3□□□□□ -1.56
NUP54-206ENST00000508465 GRB14Q14449 540 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 FXNQ16595 210 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 RNF151Q2KHN1 245 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 CCDC96Q2M329 555 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 SNRNP48Q6IEG0 339 aaKnown RBP5.3□□□□□ -1.56
NUP54-206ENST00000508465 USP53Q70EK8 1073 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 CENPQQ7L2Z9 268 aaPredicted RBP5.3□□□□□ -1.56
NUP54-206ENST00000508465 CHST3Q7LGC8 479 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 TICAM2Q86XR7 235 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 MB21D1Q8N884 522 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 GMCL1P1Q8NEA9 526 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 REPS2Q8NFH8 660 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 IL17DQ8TAD2 202 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 DIS3LQ8TF46 1054 aaKnown RBP5.3□□□□□ -1.56
NUP54-206ENST00000508465 CHURC1Q8WUH1 139 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 STAG1Q8WVM7 1258 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 KCNJ15Q99712 375 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 DPYSL5Q9BPU6 564 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 PHF20Q9BVI0 1012 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 UBA5Q9GZZ9 404 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.3□□□□□ -1.56
NUP54-206ENST00000508465 CPVLQ9H3G5 476 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 MROH8Q9H579 483 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 VAT1LQ9HCJ6 419 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 CTNNA3Q9UI47 895 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 FEM1BQ9UK73 627 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 DDX49Q9Y6V7 483 aaKnown RBP5.3□□□□□ -1.56
NUP54-206ENST00000508465 MGAMO43451 1857 aa5.3□□□□□ -1.56
NUP54-206ENST00000508465 RPTORQ8N122 1335 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 H0YGN5 161 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 MSCO60682 206 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 SLC25A27O95847 323 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 TOP1P11387 765 aaKnown RBP5.29□□□□□ -1.56
NUP54-206ENST00000508465 ALAS1P13196 640 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 GRK2P25098 689 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 GRK3P35626 688 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 NOVP48745 357 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 EPHA5P54756 1037 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 RRADP55042 308 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 CNTN2Q02246 1040 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 HHEXQ03014 270 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 IMMTQ16891 758 aaKnown RBP5.29□□□□□ -1.56
NUP54-206ENST00000508465 KIZQ2M2Z5 673 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 MAP3K21Q5TCX8 1036 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 MFSD14CQ5VZR4 134 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 CYB5R4Q7L1T6 521 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 EEPD1Q7L9B9 569 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 SHCBP1Q8NEM2 672 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 MICAL1Q8TDZ2 1067 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 CACTINQ8WUQ7 758 aaKnown RBP5.29□□□□□ -1.56
NUP54-206ENST00000508465 RUFY2Q8WXA3 655 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 SOCS4Q8WXH5 440 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 ESR2Q92731 530 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 PAWRQ96IZ0 340 aaKnown RBP5.29□□□□□ -1.56
NUP54-206ENST00000508465 SLC38A10Q9HBR0 1119 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 TCP11L1Q9NUJ3 509 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 PPARGC1AQ9UBK2 798 aaKnown RBP5.29□□□□□ -1.56
NUP54-206ENST00000508465 PUF60Q9UHX1 559 aaKnown RBP5.29□□□□□ -1.56
NUP54-206ENST00000508465 RLFQ13129 1914 aa5.29□□□□□ -1.56
NUP54-206ENST00000508465 PLXNB2O15031 1838 aa5.28□□□□□ -1.56
NUP54-206ENST00000508465 E7EWF7 191 aa5.28□□□□□ -1.56
NUP54-206ENST00000508465 SSBP05455 408 aaKnown RBP eCLIP5.28□□□□□ -1.56
NUP54-206ENST00000508465 CYP21A2P08686 494 aa5.28□□□□□ -1.56
NUP54-206ENST00000508465 HOXC6P09630 235 aa5.28□□□□□ -1.56
NUP54-206ENST00000508465 PDHBP11177 359 aa5.28□□□□□ -1.56
NUP54-206ENST00000508465 STAT2P52630 851 aa5.28□□□□□ -1.56
NUP54-206ENST00000508465 PPP2R2AP63151 447 aa5.28□□□□□ -1.56
NUP54-206ENST00000508465 KCTD2Q14681 263 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms