RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 NOTCH4Q99466 2003 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 ZNF233A6NK53 670 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 POLR2DO15514 142 aaKnown RBP13.74□□□□□ -0.21
PTPRF-214ENST00000496043 GFRA3O60609 400 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 FGF19O95750 216 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 GJA1P17302 382 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 ME1P48163 572 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 RBP5P82980 135 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 SURF1Q15526 300 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 TEAD2Q15562 447 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 PJA1Q8NG27 643 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 OR10T2Q8NGX3 314 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 ZNF507Q8TCN5 953 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 FAM200AQ8TCP9 573 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 C2orf15Q8WU43 125 aaKnown RBP13.74□□□□□ -0.21
PTPRF-214ENST00000496043 E2F7Q96AV8 911 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 DDX23Q9BUQ8 820 aaKnown RBP13.74□□□□□ -0.21
PTPRF-214ENST00000496043 OSBPL6Q9BZF3 934 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 FOXQ1Q9C009 403 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 DNAJC25Q9H1X3 360 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 MAGEF1Q9HAY2 307 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 TRPV4Q9HBA0 871 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 KIAA1586Q9HCI6 787 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 PDE11AQ9HCR9 933 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 ITGA11Q9UKX5 1188 aa13.74□□□□□ -0.21
PTPRF-214ENST00000496043 R3HCC1Q9Y3T6 440 aaKnown RBP13.74□□□□□ -0.21
PTPRF-214ENST00000496043 PDCD11Q14690 1871 aaKnown RBP13.74□□□□□ -0.21
PTPRF-214ENST00000496043 FAM170BA6NMN3 283 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 EIF3DO15371 548 aaKnown RBP eCLIP13.73□□□□□ -0.21
PTPRF-214ENST00000496043 NCAM2O15394 837 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 HUS1O60921 280 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 ITGB3P05106 788 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 KRT19P08727 400 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 PSMC3P17980 439 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 FCARP24071 287 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 POLR2BP30876 1174 aaKnown RBP13.73□□□□□ -0.21
PTPRF-214ENST00000496043 WNT7BP56706 349 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 TAF12Q16514 161 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 MGAT5BQ3V5L5 792 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 LRRTM3Q86VH5 581 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 MFSD6LQ8IWD5 586 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 LRRC52Q8N7C0 313 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 C1orf127Q8N9H9 656 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 SHKBP1Q8TBC3 707 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 ZSCAN18Q8TBC5 510 aaPredicted RBP13.73□□□□□ -0.21
PTPRF-214ENST00000496043 SPPL2BQ8TCT7 592 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 DNASE1L2Q92874 299 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 IRF7Q92985 503 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 HPS3Q969F9 1004 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 PSMG2Q969U7 264 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 ANKRD36BP1Q96IX9 119 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 SEPT5Q99719 369 aaPredicted RBP13.73□□□□□ -0.21
PTPRF-214ENST00000496043 SLITRK6Q9H5Y7 841 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 BRD9Q9H8M2 597 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 DLGAP2Q9P1A6 1054 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 RCOR1Q9UKL0 485 aa13.73□□□□□ -0.21
PTPRF-214ENST00000496043 MRPS17Q9Y2R5 130 aaKnown RBP13.73□□□□□ -0.21
PTPRF-214ENST00000496043 CACNA1HO95180 2353 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 A0A1W2PRU2 124 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 NRG2O14511 850 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-214ENST00000496043 ZNF263O14978 683 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 SOAT2O75908 522 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 TMEM191BP0C7N4 346 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 VIPR2P41587 438 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 SNRPFP62306 86 aaKnown RBP13.72□□□□□ -0.21
PTPRF-214ENST00000496043 TSPY1Q01534 308 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 BFSP1Q12934 665 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 GRM2Q14416 872 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 UBXN2BQ14CS0 331 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 VEPH1Q14D04 833 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 DUOXA2Q1HG44 320 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 ARHGAP15Q53QZ3 475 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 FAM26FQ5R3K3 315 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 RESP18Q5W5W9 173 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 ZNF852Q6ZMS4 543 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 UNC13DQ70J99 1090 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 EPM2AIP1Q7L775 607 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-214ENST00000496043 FRMD5Q7Z6J6 570 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 TMC8Q8IU68 726 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 C1orf210Q8IVY1 113 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 TMEM86AQ8N2M4 240 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 TTC9BQ8N6N2 239 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 GLIS3Q8NEA6 775 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 DEPDC1BQ8WUY9 529 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 NKD2Q969F2 451 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-214ENST00000496043 BCO2Q9BYV7 579 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 ATXN3LQ9H3M9 355 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 INTS13Q9NVM9 706 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 PCDHB5Q9Y5E4 795 aa13.72□□□□□ -0.21
PTPRF-214ENST00000496043 PVALEFA0A1B0GWK0 134 aa13.71□□□□□ -0.21
PTPRF-214ENST00000496043 HEPACAM2A8MVW5 462 aa13.71□□□□□ -0.21
PTPRF-214ENST00000496043 MAN2B1O00754 1011 aa13.71□□□□□ -0.21
PTPRF-214ENST00000496043 LRRN2O75325 713 aa13.71□□□□□ -0.21
PTPRF-214ENST00000496043 TNNC2P02585 160 aa13.71□□□□□ -0.21
PTPRF-214ENST00000496043 HAPLN1P10915 354 aaPredicted RBP13.71□□□□□ -0.21
PTPRF-214ENST00000496043 GLULP15104 373 aa13.71□□□□□ -0.21
PTPRF-214ENST00000496043 CD72P21854 359 aa13.71□□□□□ -0.21
PTPRF-214ENST00000496043 GABRR2P28476 465 aa13.71□□□□□ -0.21
PTPRF-214ENST00000496043 GDI1P31150 447 aa13.71□□□□□ -0.21
PTPRF-214ENST00000496043 HOXD13P35453 343 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms