RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 TMEM209Q96SK2 561 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 L1RE1Q9UN81 338 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 SCN1AP35498 2009 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 CLUHO75153 1309 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 MTCL1Q9Y4B5 1905 aaKnown RBP17.11■□□□□ 0.33
LIME1-209ENST00000494776 BDP1A6H8Y1 2624 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 C2CD4DB7Z1M9 353 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 GOLGA6L22H0YM25 854 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 SEC24AO95486 1093 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 GBP2P32456 591 aaPredicted RBP17.11■□□□□ 0.33
LIME1-209ENST00000494776 TNNC1P63316 161 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 DLG4P78352 724 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 MYL7Q01449 175 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 TSPY1Q01534 308 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 SLC39A12Q504Y0 691 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 ANKRD40Q6AI12 368 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 KLHL10Q6JEL2 608 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 RNF135Q8IUD6 432 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 DCP1BQ8IZD4 617 aaKnown RBP17.11■□□□□ 0.33
LIME1-209ENST00000494776 ADGRF2Q8IZF7 708 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 OR10T2Q8NGX3 314 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 SYAP1Q96A49 352 aaPredicted RBP17.11■□□□□ 0.33
LIME1-209ENST00000494776 EEF2KMTQ96G04 330 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 DHTKD1Q96HY7 919 aaPredicted RBP17.11■□□□□ 0.33
LIME1-209ENST00000494776 ZCWPW1Q9H0M4 648 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 GZF1Q9H116 711 aaPredicted RBP17.11■□□□□ 0.33
LIME1-209ENST00000494776 DDX43Q9NXZ2 648 aaKnown RBP17.11■□□□□ 0.33
LIME1-209ENST00000494776 USTQ9Y2C2 406 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 INSL5Q9Y5Q6 135 aa17.11■□□□□ 0.33
LIME1-209ENST00000494776 IKBKBO14920 756 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 PAPLNO95428 1278 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 FSHRP23945 695 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 CCNE1P24864 410 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 ATICP31939 592 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 LHX1P48742 406 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 MYL6P60660 151 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 CLDN10P78369 228 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 FKBP3Q00688 224 aaKnown RBP17.1■□□□□ 0.33
LIME1-209ENST00000494776 LRRC63Q05C16 580 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 TWF1Q12792 350 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 MORC3Q14149 939 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 WDR72Q3MJ13 1102 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 TDRD10Q5VZ19 366 aaKnown RBP17.1■□□□□ 0.33
LIME1-209ENST00000494776 GET4Q7L5D6 327 aaPredicted RBP17.1■□□□□ 0.33
LIME1-209ENST00000494776 DPH6Q7L8W6 267 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 PLCD3Q8N3E9 789 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 SPATA18Q8TC71 538 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 MMRN2Q9H8L6 949 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 KIAA1468Q9P260 1216 aa17.1■□□□□ 0.33
LIME1-209ENST00000494776 NXF1Q9UBU9 619 aaKnown RBP17.1■□□□□ 0.33
LIME1-209ENST00000494776 MUC3AQ02505 3323 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 MTMR11A4FU01 709 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 TRIM49BA6NDI0 452 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 C4BPAP04003 597 aaKnown RBP17.09■□□□□ 0.33
LIME1-209ENST00000494776 POU2F2P09086 479 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 PCSK1P29120 753 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 ALDH1A3P47895 512 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 CDR1P51861 262 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 DUSP4Q13115 394 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 PLD1Q13393 1074 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 NCOA4Q13772 614 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 SOWAHAQ2M3V2 549 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 IQCEQ6IPM2 695 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 ATAD1Q8NBU5 361 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 ZNF512Q96ME7 567 aaPredicted RBP17.09■□□□□ 0.33
LIME1-209ENST00000494776 RTP3Q9BQQ7 232 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 MKNK1Q9BUB5 465 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 LMBRD1Q9NUN5 540 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 HCFC1R1Q9NWW0 138 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 SLC27A5Q9Y2P5 690 aa17.09■□□□□ 0.33
LIME1-209ENST00000494776 BICDL2A1A5D9 508 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 TRIM49P0CI25 452 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 TRIM49CP0CI26 452 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 ALADP13716 330 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 CD44P16070 742 aaKnown RBP17.08■□□□□ 0.32
LIME1-209ENST00000494776 PTPN2P17706 415 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 ACAT1P24752 427 aaKnown RBP17.08■□□□□ 0.32
LIME1-209ENST00000494776 PIK3CAP42336 1068 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 PMS1P54277 932 aaKnown RBP17.08■□□□□ 0.32
LIME1-209ENST00000494776 EPHB3P54753 998 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 NTHL1P78549 312 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 SMARCB1Q12824 385 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 SGSM1Q2NKQ1 1148 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 ZNF699Q32M78 642 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 PABPC1LQ4VXU2 614 aaKnown RBP17.08■□□□□ 0.32
LIME1-209ENST00000494776 ZNF667Q5HYK9 610 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 SV2AQ7L0J3 742 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 ZDHHC14Q8IZN3 488 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 TRIML1Q8N9V2 468 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 C2orf15Q8WU43 125 aaKnown RBP17.08■□□□□ 0.32
LIME1-209ENST00000494776 NELFBQ8WX92 580 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 SEPT5Q99719 369 aaPredicted RBP17.08■□□□□ 0.32
LIME1-209ENST00000494776 ACBD6Q9BR61 282 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 CORO1BQ9BR76 489 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 SNX25Q9H3E2 840 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 CLSTN2Q9H4D0 955 aa17.08■□□□□ 0.32
LIME1-209ENST00000494776 ABI2Q9NYB9 513 aaPredicted RBP17.08■□□□□ 0.32
LIME1-209ENST00000494776 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.08■□□□□ 0.32
LIME1-209ENST00000494776 DNMT3BQ9UBC3 853 aaKnown RBP17.08■□□□□ 0.32
LIME1-209ENST00000494776 LIMD1Q9UGP4 676 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms