RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 MRPL45Q9BRJ2 306 aaKnown RBP13.51□□□□□ -0.25
VPS52-220ENST00000493674 ELOVL4Q9GZR5 314 aa13.51□□□□□ -0.25
VPS52-220ENST00000493674 RC3H2Q9HBD1 1191 aaKnown RBP13.51□□□□□ -0.25
VPS52-220ENST00000493674 IL23AQ9NPF7 189 aa13.51□□□□□ -0.25
VPS52-220ENST00000493674 PRDM5Q9NQX1 630 aaPredicted RBP13.51□□□□□ -0.25
VPS52-220ENST00000493674 CACNG4Q9UBN1 327 aa13.51□□□□□ -0.25
VPS52-220ENST00000493674 HMGXB4Q9UGU5 601 aa13.51□□□□□ -0.25
VPS52-220ENST00000493674 L1RE1Q9UN81 338 aa13.51□□□□□ -0.25
VPS52-220ENST00000493674 INPP5FQ9Y2H2 1132 aa13.51□□□□□ -0.25
VPS52-220ENST00000493674 PCDHB7Q9Y5E2 793 aa13.51□□□□□ -0.25
VPS52-220ENST00000493674 PCDHA13Q9Y5I0 950 aa13.51□□□□□ -0.25
VPS52-220ENST00000493674 SNX9Q9Y5X1 595 aa13.51□□□□□ -0.25
VPS52-220ENST00000493674 CASTOR2A6NHX0 329 aa13.5□□□□□ -0.25
VPS52-220ENST00000493674 H0YGN5 161 aa13.5□□□□□ -0.25
VPS52-220ENST00000493674 EFCAB14O75071 495 aa13.5□□□□□ -0.25
VPS52-220ENST00000493674 BAIAP3O94812 1187 aa13.5□□□□□ -0.25
VPS52-220ENST00000493674 IPO7O95373 1038 aaKnown RBP13.5□□□□□ -0.25
VPS52-220ENST00000493674 MMEP08473 750 aa13.5□□□□□ -0.25
VPS52-220ENST00000493674 GZMAP12544 262 aa13.5□□□□□ -0.25
VPS52-220ENST00000493674 WARSP23381 471 aaKnown RBP13.5□□□□□ -0.25
VPS52-220ENST00000493674 GNA15P30679 374 aa13.5□□□□□ -0.25
VPS52-220ENST00000493674 SPA17Q15506 151 aa13.5□□□□□ -0.25
VPS52-220ENST00000493674 ALKBH5Q6P6C2 394 aaKnown RBP13.5□□□□□ -0.25
VPS52-220ENST00000493674 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.5□□□□□ -0.25
VPS52-220ENST00000493674 UNC93AQ86WB7 457 aa13.5□□□□□ -0.25
VPS52-220ENST00000493674 RPUSD2Q8IZ73 545 aaKnown RBP13.5□□□□□ -0.25
VPS52-220ENST00000493674 TMEM199Q8N511 208 aa13.5□□□□□ -0.25
VPS52-220ENST00000493674 SPATA18Q8TC71 538 aa13.5□□□□□ -0.25
VPS52-220ENST00000493674 ISCUQ9H1K1 167 aa13.5□□□□□ -0.25
VPS52-220ENST00000493674 INTUQ9ULD6 942 aa13.5□□□□□ -0.25
VPS52-220ENST00000493674 PCDHGC3Q9UN70 934 aa13.5□□□□□ -0.25
VPS52-220ENST00000493674 PLXNA3P51805 1871 aa13.5□□□□□ -0.25
VPS52-220ENST00000493674 TRIOBPQ9H2D6 2365 aa13.5□□□□□ -0.25
VPS52-220ENST00000493674 MTCL1Q9Y4B5 1905 aaKnown RBP13.49□□□□□ -0.25
VPS52-220ENST00000493674 M0QZQ0 153 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 GABRDO14764 452 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 CLSTN1O94985 981 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 CALCAP01258 141 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 CYP1A1P04798 512 aaPredicted RBP13.49□□□□□ -0.25
VPS52-220ENST00000493674 CYP11A1P05108 521 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 UNGP13051 313 aaPredicted RBP13.49□□□□□ -0.25
VPS52-220ENST00000493674 TNFAIP3P21580 790 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 CDH5P33151 784 aaPredicted RBP13.49□□□□□ -0.25
VPS52-220ENST00000493674 MAGEA1P43355 309 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 GATMP50440 423 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 NDST1P52848 882 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 DCLRE1AQ6PJP8 1040 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 TRIM72Q6ZMU5 477 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 OSTM1Q86WC4 334 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 ZNF280BQ86YH2 543 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 PDCL2Q8N4E4 241 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 ZNF606Q8WXB4 792 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 TFAP2BQ92481 460 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 MRPL9Q9BYD2 267 aaKnown RBP13.49□□□□□ -0.25
VPS52-220ENST00000493674 LACRTQ9GZZ8 138 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 TRMT1Q9NXH9 659 aaKnown RBP13.49□□□□□ -0.25
VPS52-220ENST00000493674 LRFN2Q9ULH4 789 aa13.49□□□□□ -0.25
VPS52-220ENST00000493674 NCANO14594 1321 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 COL4A4P53420 1690 aaPredicted RBP13.48□□□□□ -0.25
VPS52-220ENST00000493674 A0A1W2PPC1 479 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 BTNL10A8MVZ5 291 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 DGKIO75912 1065 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 KIF4AO95239 1232 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 ABL1P00519 1130 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 WDR5P61964 334 aaKnown RBP13.48□□□□□ -0.25
VPS52-220ENST00000493674 NOMO3P69849 1222 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 CENPCQ03188 943 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 PPIGQ13427 754 aaKnown RBP eCLIP13.48□□□□□ -0.251e-7■■■■□ 26
VPS52-220ENST00000493674 CLEC16AQ2KHT3 1053 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 TIGD5Q53EQ6 642 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 CCDC122Q5T0U0 273 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 TAF3Q5VWG9 929 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 C16orf59Q7L2K0 433 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 ADGRF2Q8IZF7 708 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 CRYBG2Q8N1P7 616 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 TMEM86AQ8N2M4 240 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 LRRC43Q8N309 656 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 APPL2Q8NEU8 664 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 TOP1MTQ969P6 601 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 ZNF689Q96CS4 500 aaPredicted RBP13.48□□□□□ -0.25
VPS52-220ENST00000493674 TMEM176AQ96HP8 235 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 SUSD3Q96L08 255 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 SENP8Q96LD8 212 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 MMS19Q96T76 1030 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 TMEM175Q9BSA9 504 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.48□□□□□ -0.25
VPS52-220ENST00000493674 NT5C1AQ9BXI3 368 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 PACSIN1Q9BY11 444 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 NRDE2Q9H7Z3 1164 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 LUC7LQ9NQ29 371 aaKnown RBP13.48□□□□□ -0.25
VPS52-220ENST00000493674 TAS2R14Q9NYV8 317 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 KIAA1257Q9ULG3 409 aa13.48□□□□□ -0.25
VPS52-220ENST00000493674 O00370 1275 aa13.47□□□□□ -0.25
VPS52-220ENST00000493674 CYB561D2O14569 222 aa13.47□□□□□ -0.25
VPS52-220ENST00000493674 THAP12O43422 761 aa13.47□□□□□ -0.25
VPS52-220ENST00000493674 HUS1O60921 280 aa13.47□□□□□ -0.25
VPS52-220ENST00000493674 RTN2O75298 545 aa13.47□□□□□ -0.25
VPS52-220ENST00000493674 LSM8O95777 96 aaKnown RBP13.47□□□□□ -0.25
VPS52-220ENST00000493674 EFEMP2O95967 443 aa13.47□□□□□ -0.25
VPS52-220ENST00000493674 ITGB1P05556 798 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms