RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 CBWD1Q9BRT8 395 aa11.54□□□□□ -0.56
COL6A3-214ENST00000493608 TRIM9Q9C026 710 aa11.54□□□□□ -0.56
COL6A3-214ENST00000493608 ASB7Q9H672 318 aa11.54□□□□□ -0.56
COL6A3-214ENST00000493608 DPP3Q9NY33 737 aa11.54□□□□□ -0.56
COL6A3-214ENST00000493608 IGSF9Q9P2J2 1179 aa11.54□□□□□ -0.56
COL6A3-214ENST00000493608 FBXL21Q9UKT6 434 aa11.54□□□□□ -0.56
COL6A3-214ENST00000493608 CFAP45Q9UL16 551 aa11.54□□□□□ -0.56
COL6A3-214ENST00000493608 FCF1Q9Y324 198 aaKnown RBP11.54□□□□□ -0.56
COL6A3-214ENST00000493608 KMT2EQ8IZD2 1858 aa11.54□□□□□ -0.56
COL6A3-214ENST00000493608 ANO9A1A5B4 782 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 PIRO00625 290 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 LRG1P02750 347 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 RHOP08100 348 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 PTPN2P17706 415 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 AVPR2P30518 371 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 HOXD13P35453 343 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 RPIAP49247 311 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 AARSP49588 968 aaKnown RBP eCLIP11.53□□□□□ -0.56
COL6A3-214ENST00000493608 TFAMQ00059 246 aaKnown RBP11.53□□□□□ -0.56
COL6A3-214ENST00000493608 AMPD3Q01432 767 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 SLC5A9Q2M3M2 681 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 RESP18Q5W5W9 173 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 OVOS1Q6IE37 1185 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 PARM1Q6UWI2 310 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 TCEAL8Q8IYN2 117 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 FLCNQ8NFG4 579 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 TCEAL4Q96EI5 215 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 MCRS1Q96EZ8 462 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 TSPAN18Q96SJ8 248 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 C7orf25Q9BPX7 421 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 CORO1BQ9BR76 489 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 LRRC27Q9C0I9 530 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 MFSD1Q9H3U5 465 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 CUEDC2Q9H467 287 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 FAM13BQ9NYF5 915 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 SERTAD1Q9UHV2 236 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 RCOR1Q9UKL0 485 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 CDH7Q9ULB5 785 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 DUSP12Q9UNI6 340 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 DERAQ9Y315 318 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 C2CD2Q9Y426 696 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 NUMBLQ9Y6R0 609 aa11.53□□□□□ -0.56
COL6A3-214ENST00000493608 ARHGEF37A1IGU5 675 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 CYB561D2O14569 222 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 OAZ2O95190 189 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 IL18RAPO95256 599 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 VNN2O95498 520 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 ODC1P11926 461 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 GARTP22102 1010 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 TWF1Q12792 350 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 DUSP4Q13115 394 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 CUL4BQ13620 913 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 HTR4Q13639 388 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 TPGS2Q68CL5 300 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 LMBRD2Q68DH5 695 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-214ENST00000493608 ATL3Q6DD88 541 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 ARMCX5Q6P1M9 558 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 NELFCDQ8IXH7 590 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 PRSS33Q8NF86 280 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 FGF14Q92915 247 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 PYM1Q9BRP8 204 aaKnown RBP11.52□□□□□ -0.57
COL6A3-214ENST00000493608 CRISPLD1Q9H336 500 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 TMEM206Q9H813 350 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 PDE11AQ9HCR9 933 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 RBAKQ9NYW8 714 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-214ENST00000493608 AFF4Q9UHB7 1163 aaKnown RBP11.52□□□□□ -0.57
COL6A3-214ENST00000493608 KCNH3Q9ULD8 1083 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 CA14Q9ULX7 337 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 MRPS23Q9Y3D9 190 aaKnown RBP11.52□□□□□ -0.57
COL6A3-214ENST00000493608 INSL5Q9Y5Q6 135 aa11.52□□□□□ -0.57
COL6A3-214ENST00000493608 A0A1B0GVL5 298 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 ANHXE9PGG2 379 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 CLIC2O15247 247 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 PI15O43692 258 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 EXTL3O43909 919 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 SOAT2O75908 522 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 LDHAP00338 332 aaKnown RBP11.51□□□□□ -0.57
COL6A3-214ENST00000493608 ITGB3P05106 788 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 GJA1P17302 382 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 CEBPBP17676 345 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 TYMPP19971 482 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 POLR2BP30876 1174 aaKnown RBP11.51□□□□□ -0.57
COL6A3-214ENST00000493608 CLCN1P35523 988 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 CCR2P41597 374 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 TAF6P49848 677 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 ALCAMQ13740 583 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 FAM26FQ5R3K3 315 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 STXBP4Q6ZWJ1 553 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 RTL10Q7L3V2 364 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 BRSK2Q8IWQ3 736 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 NPAS3Q8IXF0 933 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 SIX5Q8N196 739 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 TTC9BQ8N6N2 239 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 TMEM105Q8N8V8 129 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 ATAD1Q8NBU5 361 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 ZNF507Q8TCN5 953 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 GPR152Q8TDT2 470 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 BORCS6Q96GS4 357 aa11.51□□□□□ -0.57
COL6A3-214ENST00000493608 ZNF512Q96ME7 567 aaPredicted RBP11.51□□□□□ -0.57
COL6A3-214ENST00000493608 KXD1Q9BQD3 176 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms