RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 NKAPLQ5M9Q1 402 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 TMTC4Q5T4D3 741 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 OLFML2BQ68BL8 750 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 KRT40Q6A162 431 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 TTLL5Q6EMB2 1281 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 ZDHHC24Q6UX98 284 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 DSTYKQ6XUX3 929 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 SPOCD1Q6ZMY3 1216 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 FASTKD5Q7L8L6 764 aaKnown RBP5.35□□□□□ -1.55
VPS13A-212ENST00000493341 UBE3BQ7Z3V4 1068 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 TP53INP2Q8IXH6 220 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 OR8H2Q8N162 312 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 OR5M3Q8NGP4 307 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 CSGALNACT1Q8TDX6 532 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 HVCN1Q96D96 273 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 NELL2Q99435 816 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 SLC6A17Q9H1V8 727 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 PABPC3Q9H361 631 aaKnown RBP5.35□□□□□ -1.55
VPS13A-212ENST00000493341 MBNL3Q9NUK0 354 aaKnown RBP5.35□□□□□ -1.55
VPS13A-212ENST00000493341 SLC45A2Q9UMX9 530 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 MTO1Q9Y2Z2 717 aaKnown RBP5.35□□□□□ -1.55
VPS13A-212ENST00000493341 PLEKHM1Q9Y4G2 1056 aa5.35□□□□□ -1.55
VPS13A-212ENST00000493341 ATRNL1Q5VV63 1379 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 ANKRD18BA2A2Z9 1011 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 FAM181BA6NEQ2 426 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 M0QYG6 137 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 RXRAP19793 462 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 VIPR1P32241 457 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 ZNF135P52742 658 aaPredicted RBP5.34□□□□□ -1.55
VPS13A-212ENST00000493341 PNLIPRP1P54315 467 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 POLE2P56282 527 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 AP2B1P63010 937 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 YBX1P67809 324 aaKnown RBP5.34□□□□□ -1.55
VPS13A-212ENST00000493341 APBA1Q02410 837 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 SMAD4Q13485 552 aaKnown RBP5.34□□□□□ -1.55
VPS13A-212ENST00000493341 ACAP1Q15027 740 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 SPATA1Q5VX52 437 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 TRMT10BQ6PF06 316 aaKnown RBP5.34□□□□□ -1.55
VPS13A-212ENST00000493341 KIAA0408Q6ZU52 694 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 KRT28Q7Z3Y7 464 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 SCAMP5Q8TAC9 235 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 NUP133Q8WUM0 1156 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 CEP95Q96GE4 821 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 WRNIP1Q96S55 665 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 MRI1Q9BV20 369 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 NCDNQ9UBB6 729 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 ARHGAP26Q9UNA1 814 aa5.34□□□□□ -1.55
VPS13A-212ENST00000493341 FSD2A1L4K1 749 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 MTSS1O43312 755 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 DNPH1O43598 174 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 COBLO75128 1261 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 DDX58O95786 925 aaKnown RBP5.33□□□□□ -1.56
VPS13A-212ENST00000493341 ATF2P15336 505 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 PECAM1P16284 738 aaPredicted RBP5.33□□□□□ -1.56
VPS13A-212ENST00000493341 ATP5JP18859 108 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 SLC6A4P31645 630 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 MRE11P49959 708 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 SEC24CP53992 1094 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 RSPO4Q2I0M5 234 aaPredicted RBP5.33□□□□□ -1.56
VPS13A-212ENST00000493341 AMOTQ4VCS5 1084 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 CRB2Q5IJ48 1285 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 MFSD14BQ5SR56 506 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 RRAGAQ7L523 313 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 USP37Q86T82 979 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 CCDC28AQ8IWP9 274 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 ZNF384Q8TF68 577 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 THAP4Q8WY91 577 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 LIN37Q96GY3 246 aaPredicted RBP5.33□□□□□ -1.56
VPS13A-212ENST00000493341 NUDT16L1Q9BRJ7 211 aaKnown RBP5.33□□□□□ -1.56
VPS13A-212ENST00000493341 C11orf84Q9BUA3 381 aaPredicted RBP5.33□□□□□ -1.56
VPS13A-212ENST00000493341 KATNBL1Q9H079 304 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 USP40Q9NVE5 1235 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 XPR1Q9UBH6 696 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 H7C4K7 107 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 DYRK3O43781 588 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 SLC43A1O75387 559 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 CKBP12277 381 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 NPPBP16860 134 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 TPH1P17752 444 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 FBLN1P23142 703 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 ACVR2AP27037 513 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 ATICP31939 592 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 AARSP49588 968 aaKnown RBP eCLIP5.33□□□□□ -1.56
VPS13A-212ENST00000493341 BCAT1P54687 386 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 RRADP55042 308 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 MLLT6P55198 1093 aaPredicted RBP5.33□□□□□ -1.56
VPS13A-212ENST00000493341 EFR3AQ14156 821 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 PCOLCEQ15113 449 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 FAM47AQ5JRC9 791 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 HAUS3Q68CZ6 603 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 TRIM68Q6AZZ1 485 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 ZNF529Q6P280 563 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 LARP4Q71RC2 724 aaKnown RBP eCLIP5.33□□□□□ -1.56
VPS13A-212ENST00000493341 PDSS2Q86YH6 399 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 AOPEPQ8N6M6 819 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 CENPIQ92674 756 aaPredicted RBP5.33□□□□□ -1.56
VPS13A-212ENST00000493341 SERINC2Q96SA4 455 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 PPP1R9BQ96SB3 815 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 RTKNQ9BST9 563 aa5.33□□□□□ -1.56
VPS13A-212ENST00000493341 PREBQ9HCU5 417 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms