RNA–Protein interactions for RNA: ENST00000491165.5

USF3-203, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USF3, Length 2,133 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-203ENST00000491165 PDCD11Q14690 1871 aaKnown RBP24.28■■□□□ 1.48
USF3-203ENST00000491165 ANKRD65E5RJM6 399 aa24.28■■□□□ 1.48
USF3-203ENST00000491165 RECQL4O94761 1208 aa24.28■■□□□ 1.48
USF3-203ENST00000491165 CBWD6Q4V339 395 aa24.28■■□□□ 1.48
USF3-203ENST00000491165 CBWD3Q5JTY5 395 aa24.28■■□□□ 1.48
USF3-203ENST00000491165 CBWD5Q5RIA9 395 aa24.28■■□□□ 1.48
USF3-203ENST00000491165 KCTD16Q68DU8 428 aa24.28■■□□□ 1.48
USF3-203ENST00000491165 SH2D3CQ8N5H7 860 aa24.28■■□□□ 1.48
USF3-203ENST00000491165 ZNF516Q92618 1163 aa24.28■■□□□ 1.48
USF3-203ENST00000491165 NENFQ9UMX5 172 aa24.28■■□□□ 1.48
USF3-203ENST00000491165 CEP104O60308 925 aa24.27■■□□□ 1.48
USF3-203ENST00000491165 CLTAP09496 248 aa24.27■■□□□ 1.48
USF3-203ENST00000491165 AFF1P51825 1210 aaKnown RBP24.27■■□□□ 1.48
USF3-203ENST00000491165 PSMD6Q15008 389 aa24.27■■□□□ 1.48
USF3-203ENST00000491165 TTC19Q6DKK2 380 aaPredicted RBP24.27■■□□□ 1.48
USF3-203ENST00000491165 TNS4Q8IZW8 715 aa24.27■■□□□ 1.48
USF3-203ENST00000491165 TPCN2Q8NHX9 752 aa24.27■■□□□ 1.48
USF3-203ENST00000491165 CALR3Q96L12 384 aaKnown RBP24.27■■□□□ 1.48
USF3-203ENST00000491165 ACAP3Q96P50 834 aa24.27■■□□□ 1.48
USF3-203ENST00000491165 TRAIPQ9BWF2 469 aa24.27■■□□□ 1.48
USF3-203ENST00000491165 ISCUQ9H1K1 167 aa24.27■■□□□ 1.48
USF3-203ENST00000491165 KLK14Q9P0G3 267 aa24.27■■□□□ 1.48
USF3-203ENST00000491165 A0A0U1RQF3 1178 aa24.26■■□□□ 1.47
USF3-203ENST00000491165 GTPBP10A4D1E9 387 aaKnown RBP24.26■■□□□ 1.47
USF3-203ENST00000491165 LACTBL1A8MY62 500 aa24.26■■□□□ 1.47
USF3-203ENST00000491165 LRRN2O75325 713 aa24.26■■□□□ 1.47
USF3-203ENST00000491165 HSPA9P38646 679 aaKnown RBP24.26■■□□□ 1.47
USF3-203ENST00000491165 TRADDQ15628 312 aa24.26■■□□□ 1.47
USF3-203ENST00000491165 MFSD5Q6N075 450 aa24.26■■□□□ 1.47
USF3-203ENST00000491165 KDM7AQ6ZMT4 941 aa24.26■■□□□ 1.47
USF3-203ENST00000491165 TSPYL2Q9H2G4 693 aaPredicted RBP24.26■■□□□ 1.47
USF3-203ENST00000491165 GOLPH3Q9H4A6 298 aa24.26■■□□□ 1.47
USF3-203ENST00000491165 RPF1Q9H9Y2 349 aaKnown RBP24.26■■□□□ 1.47
USF3-203ENST00000491165 RGS18Q9NS28 235 aa24.26■■□□□ 1.47
USF3-203ENST00000491165 CDH23Q9H251 3354 aa24.26■■□□□ 1.47
USF3-203ENST00000491165 A0A0A6YYK5 440 aaPredicted RBP24.26■■□□□ 1.47
USF3-203ENST00000491165 PGRMC1O00264 195 aaKnown RBP24.26■■□□□ 1.47
USF3-203ENST00000491165 H2AFZP0C0S5 128 aa24.26■■□□□ 1.47
USF3-203ENST00000491165 SYN1P17600 705 aa24.26■■□□□ 1.47
USF3-203ENST00000491165 CUL1Q13616 776 aa24.26■■□□□ 1.47
USF3-203ENST00000491165 H2AFVQ71UI9 128 aa24.26■■□□□ 1.47
USF3-203ENST00000491165 C1orf131Q8NDD1 294 aaKnown RBP24.26■■□□□ 1.47
USF3-203ENST00000491165 AJAP1Q9UKB5 411 aaPredicted RBP24.26■■□□□ 1.47
USF3-203ENST00000491165 INTUQ9ULD6 942 aa24.26■■□□□ 1.47
USF3-203ENST00000491165 C9IYK1 514 aa24.25■■□□□ 1.47
USF3-203ENST00000491165 KRT13P13646 458 aa24.25■■□□□ 1.47
USF3-203ENST00000491165 GCLMP48507 274 aa24.25■■□□□ 1.47
USF3-203ENST00000491165 CLDN10P78369 228 aa24.25■■□□□ 1.47
USF3-203ENST00000491165 PDCLQ13371 301 aa24.25■■□□□ 1.47
USF3-203ENST00000491165 AGMOQ6ZNB7 445 aa24.25■■□□□ 1.47
USF3-203ENST00000491165 OR5B17Q8NGF7 314 aa24.25■■□□□ 1.47
USF3-203ENST00000491165 ZMAT2Q96NC0 199 aaKnown RBP24.25■■□□□ 1.47
USF3-203ENST00000491165 TTC3P53804 2025 aa24.25■■□□□ 1.47
USF3-203ENST00000491165 LOC101059915A0A1B0GWI6 518 aaPredicted RBP24.25■■□□□ 1.47
USF3-203ENST00000491165 FERP16591 822 aa24.25■■□□□ 1.47
USF3-203ENST00000491165 HLTFQ14527 1009 aaKnown RBP eCLIP24.25■■□□□ 1.47
USF3-203ENST00000491165 PEX26Q7Z412 305 aa24.25■■□□□ 1.47
USF3-203ENST00000491165 DNAAF5Q86Y56 855 aa24.25■■□□□ 1.47
USF3-203ENST00000491165 TMC2Q8TDI7 906 aa24.25■■□□□ 1.47
USF3-203ENST00000491165 SEPT8Q92599 483 aa24.25■■□□□ 1.47
USF3-203ENST00000491165 ZFP42Q96MM3 310 aa24.25■■□□□ 1.47
USF3-203ENST00000491165 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.25■■□□□ 1.47
USF3-203ENST00000491165 NFICP08651 508 aa24.24■■□□□ 1.47
USF3-203ENST00000491165 ACRP10323 421 aa24.24■■□□□ 1.47
USF3-203ENST00000491165 ATP1A2P50993 1020 aa24.24■■□□□ 1.47
USF3-203ENST00000491165 GLRA4Q5JXX5 417 aa24.24■■□□□ 1.47
USF3-203ENST00000491165 ALKAL1Q6UXT8 129 aa24.24■■□□□ 1.47
USF3-203ENST00000491165 SLFN11Q7Z7L1 901 aa24.24■■□□□ 1.47
USF3-203ENST00000491165 SYCE1Q8N0S2 351 aa24.24■■□□□ 1.47
USF3-203ENST00000491165 SNX27Q96L92 541 aa24.24■■□□□ 1.47
USF3-203ENST00000491165 RABEP2Q9H5N1 569 aa24.24■■□□□ 1.47
USF3-203ENST00000491165 PARP2Q9UGN5 583 aa24.24■■□□□ 1.47
USF3-203ENST00000491165 A0A087WUV0 522 aaPredicted RBP24.23■■□□□ 1.47
USF3-203ENST00000491165 TMCO5BA8MYB1 307 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 ENPP3O14638 875 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 ZNF623O75123 536 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 PARNO95453 639 aaKnown RBP24.23■■□□□ 1.47
USF3-203ENST00000491165 EMC10Q5UCC4 262 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 ZNF598Q86UK7 904 aaKnown RBP24.23■■□□□ 1.47
USF3-203ENST00000491165 ECHDC2Q86YB7 292 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 RNF169Q8NCN4 708 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 GSTCDQ8NEC7 633 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 BADQ92934 168 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 FTHL17Q9BXU8 183 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 TMEM117Q9H0C3 514 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 CEP290O15078 2479 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 CCDC188H7C350 402 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 TNNI1P19237 187 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 STAT1P42224 750 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 FMO5P49326 533 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 TTC31Q49AM3 519 aaPredicted RBP24.23■■□□□ 1.47
USF3-203ENST00000491165 JADE1Q6IE81 842 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 SLC24A5Q71RS6 500 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 MRPL10Q7Z7H8 261 aaKnown RBP24.23■■□□□ 1.47
USF3-203ENST00000491165 ATP6V1G3Q96LB4 118 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 FNBP1Q96RU3 617 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 PLAAQ9Y263 795 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 FAM169AQ9Y6X4 670 aa24.23■■□□□ 1.47
USF3-203ENST00000491165 HMGB1P1B2RPK0 211 aaPredicted RBP24.22■■□□□ 1.47
USF3-203ENST00000491165 DDX3XO00571 662 aaKnown RBP eCLIP24.22■■□□□ 1.473e-6■■■■■ 39.4
Retrieved 100 of 20,778 RNA–protein pairs in 142.7 ms