RNA–Protein interactions for RNA: ENST00000489772.5

GGA1-222, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 1, human

TSL 2

Gene GGA1, Length 1,384 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GGA1-222	ENST00000489772	PTPN2	P17706	415 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	RPL13	P26373	211 aa	Known RBP	11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	AP3M2	P53677	418 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	NTHL1	P78549	312 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	TWF1	Q12792	350 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	SMARCB1	Q12824	385 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	DUSP4	Q13115	394 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	PLD1	Q13393	1074 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	TRPC3	Q13507	836 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	SLC39A12	Q504Y0	691 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	CEP135	Q66GS9	1140 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	CENPP	Q6IPU0	288 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	ELOA2	Q8IYF1	753 aa	Predicted RBP	11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	UBALD2	Q8IYN6	164 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	DCP1B	Q8IZD4	617 aa	Known RBP	11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	PDCL2	Q8N4E4	241 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	SMARCE1	Q969G3	411 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	ZNF512	Q96ME7	567 aa	Predicted RBP	11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	MYADM	Q96S97	322 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	HCFC1R1	Q9NWW0	138 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	IGSF9	Q9P2J2	1179 aa		11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	DNMT3B	Q9UBC3	853 aa	Known RBP	11.92	□□□□□ -0.5
GGA1-222	ENST00000489772	TRIP11	Q15643	1979 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	MTMR11	A4FU01	709 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	PRR33	A8MZF0	331 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	PHACTR2	O75167	634 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	ASGR2	P07307	311 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	RHO	P08100	348 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	NR2F2	P24468	414 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	ALDH1A3	P47895	512 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	LHX1	P48742	406 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	TUFM	P49411	452 aa	Known RBP	11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	EPHB3	P54753	998 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	CLDN10	P78369	228 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	MYL7	Q01449	175 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	TSPY1	Q01534	308 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	SIGLEC14	Q08ET2	396 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	NFIL3	Q16649	462 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	CYP4A22	Q5TCH4	519 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	ZNF658	Q5TYW1	1059 aa	Predicted RBP	11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	SCARA3	Q6AZY7	606 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	TRIM67	Q6ZTA4	783 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	DPH6	Q7L8W6	267 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	SMYD4	Q8IYR2	804 aa	Predicted RBP	11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	ATAD1	Q8NBU5	361 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	SPATA18	Q8TC71	538 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	C2orf15	Q8WU43	125 aa	Known RBP	11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	NXPE3	Q969Y0	559 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	TMEM209	Q96SK2	561 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	RTP3	Q9BQQ7	232 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	ACBD6	Q9BR61	282 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	CORO1B	Q9BR76	489 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	KCNK12	Q9HB15	430 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	C11orf16	Q9NQ32	467 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	AVEN	Q9NQS1	362 aa	Predicted RBP	11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	DDX43	Q9NXZ2	648 aa	Known RBP	11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	HSFX1	Q9UBD0	423 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	CDH7	Q9ULB5	785 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	L1RE1	Q9UN81	338 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	SLC27A5	Q9Y2P5	690 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	MRPS23	Q9Y3D9	190 aa	Known RBP	11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	YIPF1	Q9Y548	306 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	PCDHA5	Q9Y5H7	936 aa		11.91	□□□□□ -0.5
GGA1-222	ENST00000489772	VWA8	A3KMH1	1905 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	PLXNA3	P51805	1871 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	LRRIQ3	A6PVS8	624 aa	Predicted RBP	11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	ZNF197	O14709	1029 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	MAPK13	O15264	365 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	GADD45B	O75293	160 aa	Predicted RBP	11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	VNN2	O95498	520 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	CST3	P01034	146 aa	Predicted RBP	11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	ATIC	P31939	592 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	CASP4	P49662	377 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	ADAM9	Q13443	819 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	BIRC3	Q13489	604 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	TDG	Q13569	410 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	NFE2	Q16621	373 aa	Predicted RBP	11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	SOWAHA	Q2M3V2	549 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	INTS8	Q75QN2	995 aa	Known RBP	11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	PDZD4	Q76G19	769 aa	Predicted RBP	11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	ADGRF2	Q8IZF7	708 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	LEMD2	Q8NC56	503 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	SPATA20	Q8TB22	786 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	ITFG1	Q8TB96	612 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	PARD3B	Q8TEW8	1205 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	ZNF516	Q92618	1163 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	ERCC4	Q92889	916 aa	Predicted RBP	11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	FGF13	Q92913	245 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	MMS19	Q96T76	1030 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	SEPT5	Q99719	369 aa	Predicted RBP	11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	LRFN3	Q9BTN0	628 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	GZF1	Q9H116	711 aa	Predicted RBP	11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	ASAH2	Q9NR71	780 aa		11.9	□□□□□ -0.5
GGA1-222	ENST00000489772	TMEM221	A6NGB7	291 aa		11.89	□□□□□ -0.51
GGA1-222	ENST00000489772		M0R296	226 aa		11.89	□□□□□ -0.51
GGA1-222	ENST00000489772	IKBKB	O14920	756 aa		11.89	□□□□□ -0.51
GGA1-222	ENST00000489772	AKAP3	O75969	853 aa		11.89	□□□□□ -0.51
GGA1-222	ENST00000489772	MICAL2	O94851	1124 aa		11.89	□□□□□ -0.51
GGA1-222	ENST00000489772	CLSTN1	O94985	981 aa		11.89	□□□□□ -0.51
GGA1-222	ENST00000489772	KRT13	P13646	458 aa		11.89	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms