RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 TAS2R14Q9NYV8 317 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 KANSL3Q9P2N6 904 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 TRIM10Q9UDY6 481 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 HMGXB4Q9UGU5 601 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 TFR2Q9UP52 801 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 NME7Q9Y5B8 376 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 KIF5CO60282 957 aa12.24□□□□□ -0.45
C9orf3-220ENST00000489318 RTN2O75298 545 aa12.24□□□□□ -0.45
C9orf3-220ENST00000489318 LSM8O95777 96 aaKnown RBP12.24□□□□□ -0.45
C9orf3-220ENST00000489318 TIMP1P01033 207 aa12.24□□□□□ -0.45
C9orf3-220ENST00000489318 PFKMP08237 780 aa12.24□□□□□ -0.45
C9orf3-220ENST00000489318 WARSP23381 471 aaKnown RBP12.24□□□□□ -0.45
C9orf3-220ENST00000489318 CDH8P55286 799 aa12.24□□□□□ -0.45
C9orf3-220ENST00000489318 NOMO3P69849 1222 aa12.24□□□□□ -0.45
C9orf3-220ENST00000489318 NOMO2Q5JPE7 1267 aa12.24□□□□□ -0.45
C9orf3-220ENST00000489318 CD300LGQ6UXG3 332 aa12.24□□□□□ -0.45
C9orf3-220ENST00000489318 NPAS4Q8IUM7 802 aa12.24□□□□□ -0.45
C9orf3-220ENST00000489318 RNF169Q8NCN4 708 aa12.24□□□□□ -0.45
C9orf3-220ENST00000489318 URGCPQ8TCY9 931 aa12.24□□□□□ -0.45
C9orf3-220ENST00000489318 TMEM176AQ96HP8 235 aa12.24□□□□□ -0.45
C9orf3-220ENST00000489318 MRPL45Q9BRJ2 306 aaKnown RBP12.24□□□□□ -0.45
C9orf3-220ENST00000489318 TBC1D13Q9NVG8 400 aa12.24□□□□□ -0.45
C9orf3-220ENST00000489318 KIAA1257Q9ULG3 409 aa12.24□□□□□ -0.45
C9orf3-220ENST00000489318 L1RE1Q9UN81 338 aa12.24□□□□□ -0.45
C9orf3-220ENST00000489318 PATJQ8NI35 1801 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 KIAA1671Q9BY89 1806 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 TRIM43BA6NCK2 446 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 GABRDO14764 452 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 THAP12O43422 761 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 MED7O43513 233 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 B4GALT3O60512 393 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 POMCP01189 267 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 CALCAP01258 141 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 FGFR1P11362 822 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 VDRP11473 427 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 BRD2P25440 801 aaKnown RBP12.23□□□□□ -0.45
C9orf3-220ENST00000489318 ITGB8P26012 769 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 NDST1P52848 882 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 GALCP54803 685 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 HADHBP55084 474 aaKnown RBP12.23□□□□□ -0.45
C9orf3-220ENST00000489318 STILQ15468 1287 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 ACAD10Q6JQN1 1059 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 MFSD5Q6N075 450 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 PHF13Q86YI8 300 aaPredicted RBP12.23□□□□□ -0.45
C9orf3-220ENST00000489318 COLGALT2Q8IYK4 626 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 TMEM86AQ8N2M4 240 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 APPL2Q8NEU8 664 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 RFFLQ8WZ73 363 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 TFAP2BQ92481 460 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 SECISBP2LQ93073 1101 aaKnown RBP12.23□□□□□ -0.45
C9orf3-220ENST00000489318 TRIM43Q96BQ3 446 aaPredicted RBP12.23□□□□□ -0.45
C9orf3-220ENST00000489318 CASD1Q96PB1 797 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 MMS19Q96T76 1030 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 PAAF1Q9BRP4 392 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 NT5C1AQ9BXI3 368 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 MRPL9Q9BYD2 267 aaKnown RBP12.23□□□□□ -0.45
C9orf3-220ENST00000489318 IRX2Q9BZI1 471 aaPredicted RBP12.23□□□□□ -0.45
C9orf3-220ENST00000489318 ZNF518BQ9C0D4 1074 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 LHX5Q9H2C1 402 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 SEPT11Q9NVA2 429 aaKnown RBP12.23□□□□□ -0.45
C9orf3-220ENST00000489318 SALL4Q9UJQ4 1053 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 GTF3C4Q9UKN8 822 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 GUCA1BQ9UMX6 200 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.23□□□□□ -0.45
C9orf3-220ENST00000489318 INPP5FQ9Y2H2 1132 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 PCDHGC5Q9Y5F6 944 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 VWA8A3KMH1 1905 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 PTPRDP23468 1912 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 NLRC5Q86WI3 1866 aa12.23□□□□□ -0.45
C9orf3-220ENST00000489318 ABHD14A-ACY1A0A1B0GW23 586 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 CASTOR2A6NHX0 329 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 M0QZQ0 153 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 O00370 1275 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 HUS1O60921 280 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 CAPN15O75808 1086 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 MTA2O94776 668 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 CYP11A1P05108 521 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 CFHP08603 1231 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 GNG11P61952 73 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 ZNF394Q53GI3 561 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 ARHGAP17Q68EM7 881 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 MON1BQ7L1V2 547 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 ADGRF2Q8IZF7 708 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 CRYBG2Q8N1P7 616 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 PDCL2Q8N4E4 241 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 TRIM58Q8NG06 486 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 CTNNBL1Q8WYA6 563 aaPredicted RBP12.22□□□□□ -0.45
C9orf3-220ENST00000489318 TRIM11Q96F44 468 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 VCPIP1Q96JH7 1222 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 CALR3Q96L12 384 aaKnown RBP12.22□□□□□ -0.45
C9orf3-220ENST00000489318 WDR24Q96S15 920 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 RC3H2Q9HBD1 1191 aaKnown RBP12.22□□□□□ -0.45
C9orf3-220ENST00000489318 CACNG4Q9UBN1 327 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 STXBP5LQ9Y2K9 1186 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 PCDHB7Q9Y5E2 793 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 CAPN6Q9Y6Q1 641 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 DUSP10Q9Y6W6 482 aa12.22□□□□□ -0.45
C9orf3-220ENST00000489318 MYH10P35580 1976 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 MACROD2A1Z1Q3 448 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 CYB561D2O14569 222 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms