RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 DUSP4Q13115 394 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 KCNB1Q14721 858 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 DUOXA2Q1HG44 320 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 SOWAHAQ2M3V2 549 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 CENPPQ6IPU0 288 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 TRAPPC11Q7Z392 1133 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 PLCD3Q8N3E9 789 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 FGF13Q92913 245 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 ASIC4Q96FT7 647 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 HPDLQ96IR7 371 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 CORO1BQ9BR76 489 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 RPP25Q9BUL9 199 aaKnown RBP14.97□□□□□ -0.01
SYNE1-226ENST00000488376 DNAJC25Q9H1X3 360 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 EPS15L1Q9UBC2 864 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 CIZ1Q9ULV3 898 aaPredicted RBP14.97□□□□□ -0.01
SYNE1-226ENST00000488376 SORCS3Q9UPU3 1222 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 SNX9Q9Y5X1 595 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 PDXKO00764 312 aa14.96□□□□□ -0.01
SYNE1-226ENST00000488376 TNNI1P19237 187 aa14.96□□□□□ -0.01
SYNE1-226ENST00000488376 COL9A1P20849 921 aa14.96□□□□□ -0.01
SYNE1-226ENST00000488376 PAX3P23760 479 aa14.96□□□□□ -0.01
SYNE1-226ENST00000488376 MYBPC2Q14324 1141 aa14.96□□□□□ -0.01
SYNE1-226ENST00000488376 PRSS36Q5K4E3 855 aa14.96□□□□□ -0.01
SYNE1-226ENST00000488376 C1orf220Q5T0J3 134 aa14.96□□□□□ -0.01
SYNE1-226ENST00000488376 METTL23Q86XA0 190 aa14.96□□□□□ -0.01
SYNE1-226ENST00000488376 NPAS3Q8IXF0 933 aa14.96□□□□□ -0.01
SYNE1-226ENST00000488376 FNBP1Q96RU3 617 aa14.96□□□□□ -0.01
SYNE1-226ENST00000488376 GDAP2Q9NXN4 497 aa14.96□□□□□ -0.01
SYNE1-226ENST00000488376 CGNQ9P2M7 1197 aaKnown RBP14.96□□□□□ -0.01
SYNE1-226ENST00000488376 DSEQ9UL01 958 aa14.96□□□□□ -0.01
SYNE1-226ENST00000488376 DOCK6Q96HP0 2047 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 NOTCH4Q99466 2003 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 PRR33A8MZF0 331 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 MOSPD3O75425 235 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 GJA1P17302 382 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 MYL6P60660 151 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 SIGLEC14Q08ET2 396 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 MTMR3Q13615 1198 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 HTR4Q13639 388 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 SURF1Q15526 300 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 ZCWPW2Q504Y3 356 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 TDRD10Q5VZ19 366 aaKnown RBP14.95□□□□□ -0.02
SYNE1-226ENST00000488376 PARM1Q6UWI2 310 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 LIMS2Q7Z4I7 341 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 SLC9A9Q8IVB4 645 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 STKLD1Q8NE28 680 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 GOLGA5Q8TBA6 731 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 PARD3BQ8TEW8 1205 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 KBTBD7Q8WVZ9 684 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 FGF14Q92915 247 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 EEF2KMTQ96G04 330 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 PKMYT1Q99640 499 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 XYLT2Q9H1B5 865 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 DDX43Q9NXZ2 648 aaKnown RBP14.95□□□□□ -0.02
SYNE1-226ENST00000488376 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.95□□□□□ -0.02
SYNE1-226ENST00000488376 CDH7Q9ULB5 785 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 TRAF3IP3Q9Y228 551 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 NME7Q9Y5B8 376 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 PCDHA5Q9Y5H7 936 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 NUMBLQ9Y6R0 609 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 TECTAO75443 2155 aa14.95□□□□□ -0.02
SYNE1-226ENST00000488376 ANHXE9PGG2 379 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 HUS1O60921 280 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 ATP2C2O75185 946 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 AKAP3O75969 853 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 VNN1O95497 513 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 PTPN2P17706 415 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 ATF6P18850 670 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 LMO2P25791 158 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 GPR15P49685 360 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 TDGQ13569 410 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 CEP135Q66GS9 1140 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 ISM2Q6H9L7 571 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 RTL10Q7L3V2 364 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 ADGRF2Q8IZF7 708 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 GUF1Q8N442 669 aaKnown RBP14.94□□□□□ -0.02
SYNE1-226ENST00000488376 SLC44A3Q8N4M1 653 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 SPATA20Q8TB22 786 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 GPR152Q8TDT2 470 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 TMEM174Q8WUU8 243 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 CCDC47Q96A33 483 aaKnown RBP14.94□□□□□ -0.02
SYNE1-226ENST00000488376 MCRS1Q96EZ8 462 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 SEPT5Q99719 369 aaPredicted RBP14.94□□□□□ -0.02
SYNE1-226ENST00000488376 LPIN3Q9BQK8 851 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 MRPL45Q9BRJ2 306 aaKnown RBP14.94□□□□□ -0.02
SYNE1-226ENST00000488376 LRRC3Q9BY71 257 aa14.94□□□□□ -0.02
SYNE1-226ENST00000488376 OXCT2Q9BYC2 517 aaPredicted RBP14.94□□□□□ -0.02
SYNE1-226ENST00000488376 ZNF334Q9HCZ1 680 aaPredicted RBP14.94□□□□□ -0.02
SYNE1-226ENST00000488376 MRPS23Q9Y3D9 190 aaKnown RBP14.94□□□□□ -0.02
SYNE1-226ENST00000488376 GABRDO14764 452 aa14.93□□□□□ -0.02
SYNE1-226ENST00000488376 MYL4P12829 197 aa14.93□□□□□ -0.02
SYNE1-226ENST00000488376 NR2F2P24468 414 aa14.93□□□□□ -0.02
SYNE1-226ENST00000488376 PRCPP42785 496 aa14.93□□□□□ -0.02
SYNE1-226ENST00000488376 PMS1P54277 932 aaKnown RBP14.93□□□□□ -0.02
SYNE1-226ENST00000488376 PSMC1P62191 440 aaKnown RBP14.93□□□□□ -0.02
SYNE1-226ENST00000488376 CLDN10P78369 228 aa14.93□□□□□ -0.02
SYNE1-226ENST00000488376 MYO1EQ12965 1108 aa14.93□□□□□ -0.02
SYNE1-226ENST00000488376 TMC8Q8IU68 726 aa14.93□□□□□ -0.02
SYNE1-226ENST00000488376 THEM5Q8N1Q8 247 aa14.93□□□□□ -0.02
SYNE1-226ENST00000488376 TOP6BLQ8N6T0 577 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms