RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 HLA-DRAP01903 254 aa12.88□□□□□ -0.35
COL3A1-206ENST00000487010 CLDN10P78369 228 aa12.88□□□□□ -0.35
COL3A1-206ENST00000487010 SATB1Q01826 763 aa12.88□□□□□ -0.35
COL3A1-206ENST00000487010 C1QBPQ07021 282 aaKnown RBP12.88□□□□□ -0.35
COL3A1-206ENST00000487010 FYB2Q5VWT5 728 aa12.88□□□□□ -0.35
COL3A1-206ENST00000487010 LMBRD2Q68DH5 695 aaPredicted RBP12.88□□□□□ -0.35
COL3A1-206ENST00000487010 SPOPLQ6IQ16 392 aa12.88□□□□□ -0.35
COL3A1-206ENST00000487010 MFSD7Q6UXD7 560 aa12.88□□□□□ -0.35
COL3A1-206ENST00000487010 ANO5Q75V66 913 aa12.88□□□□□ -0.35
COL3A1-206ENST00000487010 MCF2L2Q86YR7 1114 aa12.88□□□□□ -0.35
COL3A1-206ENST00000487010 ZNF398Q8TD17 642 aa12.88□□□□□ -0.35
COL3A1-206ENST00000487010 MRRFQ96E11 262 aaKnown RBP12.88□□□□□ -0.35
COL3A1-206ENST00000487010 SENP7Q9BQF6 1050 aa12.88□□□□□ -0.35
COL3A1-206ENST00000487010 DENND2DQ9H6A0 471 aaPredicted RBP12.88□□□□□ -0.35
COL3A1-206ENST00000487010 C17orf75Q9HAS0 396 aa12.88□□□□□ -0.35
COL3A1-206ENST00000487010 PARVAQ9NVD7 372 aa12.88□□□□□ -0.35
COL3A1-206ENST00000487010 ATP2A1O14983 1001 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 ZBED4O75132 1171 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 LMNAP02545 664 aaKnown RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 C4BPAP04003 597 aaKnown RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 KRT1P04264 644 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 ATF7P17544 494 aaPredicted RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 KRT4P19013 534 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 GNA15P30679 374 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 SFNP31947 248 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 SSTR3P32745 418 aaPredicted RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 PTDSS1P48651 473 aaKnown RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 SOX10P56693 466 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 GEMIN4P57678 1058 aaKnown RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 GHRHRQ02643 423 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 PDIA2Q13087 525 aaKnown RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 MAPK6Q16659 721 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 CTC1Q2NKJ3 1217 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 ZACNQ401N2 412 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 EFHC2Q5JST6 749 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 ZFYVE27Q5T4F4 411 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 MTDHQ86UE4 582 aaKnown RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 NLRX1Q86UT6 975 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 NPHS2Q9NP85 383 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 ZNF219Q9P2Y4 722 aaPredicted RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 TCEAL9Q9UHQ7 104 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 SHOC2Q9UQ13 582 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 PCDHB4Q9Y5E5 795 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 NDC80O14777 642 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 KIF3CO14782 793 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 EXTL3O43909 919 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 ONECUT3O60422 494 aaPredicted RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 ENTPD5O75356 428 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 TCF4P15884 667 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 MARK3P27448 753 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 PCK1P35558 622 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 PIK3CAP42336 1068 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 VCPP55072 806 aaKnown RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 GPX6P59796 221 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 NOP14P78316 857 aaKnown RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 MCL1Q07820 350 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 CUL2Q13617 745 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 PSMD6Q15008 389 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 OASLQ15646 514 aaKnown RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 WDR72Q3MJ13 1102 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 PLEKHG4Q58EX7 1191 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 ZC3H12AQ5D1E8 599 aaKnown RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 TDRD10Q5VZ19 366 aaKnown RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 PPP1R2P3Q6NXS1 205 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 SPOCD1Q6ZMY3 1216 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 CLNKQ7Z7G1 428 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 LMNTD2Q8IXW0 634 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 SUPT20HQ8NEM7 779 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 SYTL5Q8TDW5 730 aaPredicted RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 ZNF483Q8TF39 744 aaPredicted RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 BICD1Q96G01 975 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 ADAM33Q9BZ11 813 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 GLIS2Q9BZE0 524 aaPredicted RBP12.87□□□□□ -0.35
COL3A1-206ENST00000487010 DCLRE1BQ9H816 532 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 TMOD2Q9NZR1 351 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 KANSL3Q9P2N6 904 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 ANKFY1Q9P2R3 1169 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 RABGEF1Q9UJ41 708 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 NUMBLQ9Y6R0 609 aa12.87□□□□□ -0.35
COL3A1-206ENST00000487010 EIF4E1BA6NMX2 242 aaKnown RBP12.86□□□□□ -0.35
COL3A1-206ENST00000487010 H0Y3Z8 333 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 VNN1O95497 513 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 TROVE2P10155 538 aaKnown RBP eCLIP12.86□□□□□ -0.35
COL3A1-206ENST00000487010 ACADSP16219 412 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 TNNI1P19237 187 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 EIF2AK2P19525 551 aaKnown RBP12.86□□□□□ -0.35
COL3A1-206ENST00000487010 RPL7AP62424 266 aaKnown RBP12.86□□□□□ -0.35
COL3A1-206ENST00000487010 KRT76Q01546 638 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 PGM5Q15124 567 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 TMEM270Q6UE05 265 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 TAS1R3Q7RTX0 852 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 ANKMY2Q8IV38 441 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 ZNF276Q8N554 614 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 CFAP61Q8NHU2 1237 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 NKD2Q969F2 451 aaPredicted RBP12.86□□□□□ -0.35
COL3A1-206ENST00000487010 CEP170P1Q96L14 293 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 TAAR1Q96RJ0 339 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 FNBP1Q96RU3 617 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 MIPEPQ99797 713 aa12.86□□□□□ -0.35
COL3A1-206ENST00000487010 APOBEC3GQ9HC16 384 aaKnown RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms