RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 TMEM121Q9BTD3 319 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 SIK2Q9H0K1 926 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.94□□□□□ -0.18
HMGN1-216ENST00000486741 ZNF536O15090 1300 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 CNTNAP1P78357 1384 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 KCNN4O15554 427 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 ASAP2O43150 1006 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 TGFB3P10600 412 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 CETPP11597 493 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 ITIH2P19823 946 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 KIF22Q14807 665 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 PSMD6Q15008 389 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 ZNF677Q86XU0 584 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 EFCAB13Q8IY85 973 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 FAM71AQ8IYT1 594 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 FAM71DQ8N9W8 422 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 TTC13Q8NBP0 860 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 REPS2Q8NFH8 660 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 RPL21P46778 160 aaKnown RBP13.94□□□□□ -0.18
HMGN1-216ENST00000486741 DRP2Q13474 957 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 HIF1AQ16665 826 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 SHC3Q92529 594 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 RUBCNQ92622 972 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 PABPC3Q9H361 631 aaKnown RBP13.94□□□□□ -0.18
HMGN1-216ENST00000486741 RAB6BQ9NRW1 208 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 DPP3Q9NY33 737 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 DCTN4Q9UJW0 460 aa13.94□□□□□ -0.18
HMGN1-216ENST00000486741 PROSCO94903 275 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 SYF2O95926 243 aaKnown RBP13.93□□□□□ -0.18
HMGN1-216ENST00000486741 KCNA2P16389 499 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 ROR1Q01973 937 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 GCNT1Q02742 428 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 PIGHQ14442 188 aaPredicted RBP13.93□□□□□ -0.18
HMGN1-216ENST00000486741 GEN1Q17RS7 908 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 PRAMEF19Q5SWL8 479 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 ZNF473Q8WTR7 871 aaKnown RBP13.93□□□□□ -0.18
HMGN1-216ENST00000486741 KLHL29Q96CT2 875 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 CHMP6Q96FZ7 201 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 BTBD7Q9P203 1132 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 SAE1Q9UBE0 346 aaPredicted RBP13.93□□□□□ -0.18
HMGN1-216ENST00000486741 HES2Q9Y543 173 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 CCDC78A2IDD5 438 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 TCP11X1B4DZS4 312 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 F8VP50 259 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 NDC80O14777 642 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 FECHP22830 423 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 DGKDQ16760 1214 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 PAN2Q504Q3 1202 aaKnown RBP13.93□□□□□ -0.18
HMGN1-216ENST00000486741 GNASQ5JWF2 1037 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 EEF1DP3Q658K8 133 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 MROH8Q9H579 483 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.93□□□□□ -0.18
HMGN1-216ENST00000486741 ZNF214Q9UL59 606 aaPredicted RBP13.93□□□□□ -0.18
HMGN1-216ENST00000486741 UBR2Q8IWV8 1755 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 AKAP5P24588 427 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 GOLGA7BQ2TAP0 167 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 ABHD15Q6UXT9 468 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 ZNF662Q6ZS27 426 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 CPNE8Q86YQ8 564 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 ABI1Q8IZP0 508 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 ATP2A3Q93084 1043 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 SLC13A1Q9BZW2 595 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 EPN3Q9H201 632 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 DDX56Q9NY93 547 aaKnown RBP13.93□□□□□ -0.18
HMGN1-216ENST00000486741 CHMP2BQ9UQN3 213 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 FNDC3AQ9Y2H6 1198 aaKnown RBP13.93□□□□□ -0.18
HMGN1-216ENST00000486741 NR2E1Q9Y466 385 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 NWD2Q9ULI1 1742 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 STRCQ7RTU9 1775 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 NCKAP1LP55160 1127 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 CACNB2Q08289 660 aaPredicted RBP13.93□□□□□ -0.18
HMGN1-216ENST00000486741 AP1B1Q10567 949 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 AGAP3Q96P47 875 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 SIX2Q9NPC8 291 aa13.93□□□□□ -0.18
HMGN1-216ENST00000486741 ZC3H11AO75152 810 aaKnown RBP eCLIP13.92□□□□□ -0.18
HMGN1-216ENST00000486741 USP2O75604 605 aaPredicted RBP13.92□□□□□ -0.18
HMGN1-216ENST00000486741 MAGEA4P43358 317 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 NUMBP49757 651 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 CCDC62Q6P9F0 684 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 SRLQ86TD4 932 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 SPATS2Q86XZ4 545 aaKnown RBP13.92□□□□□ -0.18
HMGN1-216ENST00000486741 RIOX2Q8IUF8 465 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 DHX15O43143 795 aaKnown RBP13.92□□□□□ -0.18
HMGN1-216ENST00000486741 EDIL3O43854 480 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 ADSSP30520 456 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 CAV1Q03135 178 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 RCN2Q14257 317 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 PDZD4Q76G19 769 aaPredicted RBP13.92□□□□□ -0.18
HMGN1-216ENST00000486741 METTL23Q86XA0 190 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.92□□□□□ -0.18
HMGN1-216ENST00000486741 TGS1Q96RS0 853 aaKnown RBP13.92□□□□□ -0.18
HMGN1-216ENST00000486741 DDX23Q9BUQ8 820 aaKnown RBP13.92□□□□□ -0.18
HMGN1-216ENST00000486741 KLC2Q9H0B6 622 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 GDF3Q9NR23 364 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 COG5Q9UP83 839 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 PPP2R3BQ9Y5P8 575 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 LOC102724159A0A0B4J2E5 919 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 A0A0G2JND7 137 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 CXCL11O14625 94 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 MOCS2O96007 188 aaPredicted RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms