RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 STAU1O95793 577 aaKnown RBP12.7□□□□□ -0.38
HPS4-214ENST00000485842 CCDC192P0DO97 292 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 GTF2H1P32780 548 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 CDR1P51861 262 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 MRPS5P82675 430 aaKnown RBP12.7□□□□□ -0.38
HPS4-214ENST00000485842 MYL7Q01449 175 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 TYRO3Q06418 890 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 SMAD4Q13485 552 aaKnown RBP12.7□□□□□ -0.38
HPS4-214ENST00000485842 SOWAHAQ2M3V2 549 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 LEXMQ3ZCV2 418 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 CBWD6Q4V339 395 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 HSP90AA4PQ58FG1 418 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 CBWD3Q5JTY5 395 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 CBWD5Q5RIA9 395 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 SPOPLQ6IQ16 392 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 PTCRAQ6ISU1 281 aaPredicted RBP12.7□□□□□ -0.38
HPS4-214ENST00000485842 LILRA6Q6PI73 481 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 TMC5Q6UXY8 1006 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 TMEM86AQ8N2M4 240 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 CCDC150Q8NCX0 1101 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.7□□□□□ -0.38
HPS4-214ENST00000485842 SLC7A14Q8TBB6 771 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 ATXN2LQ8WWM7 1075 aaKnown RBP12.7□□□□□ -0.38
HPS4-214ENST00000485842 PGLYRP2Q96PD5 576 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 RTP3Q9BQQ7 232 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 OXCT2Q9BYC2 517 aaPredicted RBP12.7□□□□□ -0.38
HPS4-214ENST00000485842 SMYD3Q9H7B4 428 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 DDX43Q9NXZ2 648 aaKnown RBP12.7□□□□□ -0.38
HPS4-214ENST00000485842 DPP7Q9UHL4 492 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 CDH22Q9UJ99 828 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 EYSQ5T1H1 3165 aa12.7□□□□□ -0.38
HPS4-214ENST00000485842 COL6A3P12111 3177 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 GRXCR2A6NFK2 248 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 PRRG1O14668 218 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 MBTPS2O43462 519 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 HCRTO43612 131 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 ASS1P00966 412 aaKnown RBP12.69□□□□□ -0.38
HPS4-214ENST00000485842 C8AP07357 584 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 WEE2P0C1S8 567 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 HOXB8P17481 243 aaPredicted RBP12.69□□□□□ -0.38
HPS4-214ENST00000485842 ACAT1P24752 427 aaKnown RBP12.69□□□□□ -0.38
HPS4-214ENST00000485842 ELF1P32519 619 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 MTIF2P46199 727 aaKnown RBP12.69□□□□□ -0.38
HPS4-214ENST00000485842 RAP1GAPP47736 663 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 FMO5P49326 533 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 MCCD1P59942 119 aaPredicted RBP12.69□□□□□ -0.38
HPS4-214ENST00000485842 NOP14P78316 857 aaKnown RBP12.69□□□□□ -0.38
HPS4-214ENST00000485842 TSPY1Q01534 308 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 ADCY1Q08828 1119 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 SGSM1Q2NKQ1 1148 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 SLC39A12Q504Y0 691 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 RNF19BQ6ZMZ0 732 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 TRIM59Q8IWR1 403 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 SMRP1Q8NCR6 262 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 FBXL13Q8NEE6 735 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 ZNF461Q8TAF7 563 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 FEZF2Q8TBJ5 459 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 HDAC7Q8WUI4 952 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 KBTBD7Q8WVZ9 684 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 TAF4BQ92750 862 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 MRPL45Q9BRJ2 306 aaKnown RBP12.69□□□□□ -0.38
HPS4-214ENST00000485842 DNAJC25Q9H1X3 360 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 SNX25Q9H3E2 840 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 PLEKHA4Q9H4M7 779 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 VRTNQ9H8Y1 702 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 USP15Q9Y4E8 981 aaPredicted RBP12.69□□□□□ -0.38
HPS4-214ENST00000485842 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.69□□□□□ -0.38
HPS4-214ENST00000485842 C2orf16Q68DN1 1984 aa12.69□□□□□ -0.38
HPS4-214ENST00000485842 SYCE3A1L190 88 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 MTMR11A4FU01 709 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 N4BP1O75113 896 aaKnown RBP12.68□□□□□ -0.38
HPS4-214ENST00000485842 LRRN2O75325 713 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 ZMYND10O75800 440 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 ABLIM3O94929 683 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 C1RP00736 705 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 PDGFRBP09619 1106 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 P4HA1P13674 534 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 IL9P15248 144 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 WARSP23381 471 aaKnown RBP12.68□□□□□ -0.38
HPS4-214ENST00000485842 PCSK1P29120 753 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 LHX1P48742 406 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 MARSP56192 900 aaKnown RBP12.68□□□□□ -0.38
HPS4-214ENST00000485842 PSMC1P62191 440 aaKnown RBP12.68□□□□□ -0.38
HPS4-214ENST00000485842 GPR17Q13304 367 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 CCDC142Q17RM4 750 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 SKOR2Q2VWA4 1001 aaPredicted RBP12.68□□□□□ -0.38
HPS4-214ENST00000485842 CT47A1Q5JQC4 288 aaPredicted RBP12.68□□□□□ -0.38
HPS4-214ENST00000485842 PPM1LQ5SGD2 360 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 TPGS2Q68CL5 300 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 CES5AQ6NT32 575 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 CCDC149Q6ZUS6 474 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 DPH6Q7L8W6 267 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 LIMS2Q7Z4I7 341 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 FAM114A1Q8IWE2 563 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 DCP1BQ8IZD4 617 aaKnown RBP12.68□□□□□ -0.38
HPS4-214ENST00000485842 OR6B3Q8NGW1 331 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 SPATA18Q8TC71 538 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 SEMA4DQ92854 862 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 ASB2Q96Q27 587 aa12.68□□□□□ -0.38
HPS4-214ENST00000485842 SYT15Q9BQS2 421 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms