RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 SOX10P56693 466 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 TLE2Q04725 743 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 FXNQ16595 210 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 TMEM240Q5SV17 173 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 CACNA2D4Q7Z3S7 1137 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 RAD54LQ92698 747 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 DYDC2Q96IM9 177 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 C7orf25Q9BPX7 421 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 LACRTQ9GZZ8 138 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 OLFML3Q9NRN5 406 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 RGS18Q9NS28 235 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 NRBP2Q9NSY0 501 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 RNF19AQ9NV58 838 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 RHBDL2Q9NX52 303 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 UBAP1Q9NZ09 502 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 NFU1Q9UMS0 254 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 TRPV2Q9Y5S1 764 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 LSM1O15116 133 aaKnown RBP8.16□□□□□ -1.1
USP4-211ENST00000485450 TREHO43280 583 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 TPPPO94811 219 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 CYP1A1P04798 512 aaPredicted RBP8.16□□□□□ -1.1
USP4-211ENST00000485450 TCP1P17987 556 aaKnown RBP8.16□□□□□ -1.1
USP4-211ENST00000485450 MRPS25P82663 173 aaKnown RBP8.16□□□□□ -1.1
USP4-211ENST00000485450 MLLT1Q03111 559 aaPredicted RBP8.16□□□□□ -1.1
USP4-211ENST00000485450 PPIGQ13427 754 aaKnown RBP eCLIP8.16□□□□□ -1.15e-7■■■□□ 16
USP4-211ENST00000485450 LPIN1Q14693 890 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 KRT31Q15323 416 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 AGBL2Q5U5Z8 902 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 SWSAP1Q6NVH7 229 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 KRI1Q8N9T8 703 aaKnown RBP8.16□□□□□ -1.1
USP4-211ENST00000485450 KIFAP3Q92845 792 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 CENPTQ96BT3 561 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 CHMP6Q96FZ7 201 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 TRAPPC9Q96Q05 1148 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 SLC7A5P2Q9GIP4 190 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 SERTAD1Q9UHV2 236 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 RCCD1A6NED2 376 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 H0YGN5 161 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 ZNF623O75123 536 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 WFS1O76024 890 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 GNA14O95837 355 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 MYL3P08590 195 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 CD44P16070 742 aaKnown RBP8.15□□□□□ -1.1
USP4-211ENST00000485450 SESN3P58005 492 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 GRIN1Q05586 938 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 WDR59Q6PJI9 974 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 DTHD1Q6ZMT9 781 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 LRRC8DQ7L1W4 858 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 EEPD1Q7L9B9 569 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 KCNK18Q7Z418 384 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 PIGWQ7Z7B1 504 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 LMNTD2Q8IXW0 634 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 GPR65Q8IYL9 337 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.15□□□□□ -1.1
USP4-211ENST00000485450 RAB34Q9BZG1 259 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 ARIH1Q9Y4X5 557 aaPredicted RBP8.15□□□□□ -1.1
USP4-211ENST00000485450 NFS1Q9Y697 457 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 CNTNAP2Q9UHC6 1331 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 MTCL1Q9Y4B5 1905 aaKnown RBP8.15□□□□□ -1.1
USP4-211ENST00000485450 DCDC2CA8MYV0 355 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 BACH1O14867 736 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 GLI1P08151 1106 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 DESP17661 470 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 SNRPFP62306 86 aaKnown RBP8.15□□□□□ -1.1
USP4-211ENST00000485450 BCL2A1Q16548 175 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 PSRC1Q6PGN9 363 aaPredicted RBP8.15□□□□□ -1.1
USP4-211ENST00000485450 TAS1R3Q7RTX0 852 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 RNF168Q8IYW5 571 aaPredicted RBP8.15□□□□□ -1.1
USP4-211ENST00000485450 SLC17A8Q8NDX2 589 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 RMDN2Q96LZ7 410 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 TRMT13Q9NUP7 481 aaKnown RBP8.15□□□□□ -1.1
USP4-211ENST00000485450 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.15□□□□□ -1.1
USP4-211ENST00000485450 CNOT8Q9UFF9 292 aaKnown RBP8.15□□□□□ -1.1
USP4-211ENST00000485450 CROTQ9UKG9 612 aa8.15□□□□□ -1.1
USP4-211ENST00000485450 PLXNA3P51805 1871 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 ABHD14A-ACY1A0A1B0GW23 586 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 A0A1W2PQ67 120 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 CCT6AP40227 531 aaKnown RBP8.15□□□□□ -1.11
USP4-211ENST00000485450 MATR3P43243 847 aaKnown RBP eCLIP8.15□□□□□ -1.11
USP4-211ENST00000485450 NAMPTP43490 491 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 PTENP60484 403 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 KCNJ2P63252 427 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 MBTD1Q05BQ5 628 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 MXD4Q14582 209 aaPredicted RBP8.15□□□□□ -1.11
USP4-211ENST00000485450 MEA1Q16626 185 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 TMEM53Q6P2H8 277 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 ALKAL1Q6UXT8 129 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 OTUD6AQ7L8S5 288 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 TRIM50Q86XT4 487 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 C12orf56Q8IXR9 622 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 FTHL17Q9BXU8 183 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 TRPV6Q9H1D0 765 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 ADAM22Q9P0K1 906 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 SEL1LQ9UBV2 794 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 AGAP1Q9UPQ3 857 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 DNAH12Q6ZR08 3092 aa8.15□□□□□ -1.11
USP4-211ENST00000485450 POTEMA6NI47 508 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 E7ENQ6 273 aa8.14□□□□□ -1.11
USP4-211ENST00000485450 POLR2DO15514 142 aaKnown RBP8.14□□□□□ -1.11
USP4-211ENST00000485450 DARSP14868 501 aaKnown RBP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms