RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 PCDHA3Q9Y5H8 950 aa6.47□□□□□ -1.37
UPF3A-205ENST00000479712 ITGB4P16144 1822 aa6.47□□□□□ -1.37
UPF3A-205ENST00000479712 ROCK1Q13464 1354 aa6.46□□□□□ -1.37
UPF3A-205ENST00000479712 NFAT5O94916 1531 aa6.46□□□□□ -1.37
UPF3A-205ENST00000479712 H0YIN7 160 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 H3BUI4 141 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 ADCY6O43306 1168 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 ITGA10O75578 1167 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 ARIH2O95376 493 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 COL11A2P13942 1736 aaPredicted RBP6.46□□□□□ -1.38
UPF3A-205ENST00000479712 GLDCP23378 1020 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 CRHR1P34998 444 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 USP10Q14694 798 aaKnown RBP6.46□□□□□ -1.38
UPF3A-205ENST00000479712 RAB39AQ14964 217 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 KHDC1Q4VXA5 237 aaKnown RBP6.46□□□□□ -1.38
UPF3A-205ENST00000479712 VWA3BQ502W6 1294 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 AGBL4Q5VU57 503 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 GADL1Q6ZQY3 521 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 SRLQ86TD4 932 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 ZDHHC14Q8IZN3 488 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 GPC2Q8N158 579 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 SLC35A4Q96G79 324 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 LTV1Q96GA3 475 aaPredicted RBP6.46□□□□□ -1.38
UPF3A-205ENST00000479712 AJUBAQ96IF1 538 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 FAM167AQ96KS9 214 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 NT5C1BQ96P26 610 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 MYD88Q99836 296 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 PTPN18Q99952 460 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 VRK1Q99986 396 aaPredicted RBP6.46□□□□□ -1.38
UPF3A-205ENST00000479712 CDK19Q9BWU1 502 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 C1QTNF1Q9BXJ1 281 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 KRTAP4-9Q9BYQ8 210 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 SENP6Q9GZR1 1112 aaPredicted RBP6.46□□□□□ -1.38
UPF3A-205ENST00000479712 NUP62CLQ9H1M0 184 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 LDAHQ9H6V9 325 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 BARX1Q9HBU1 254 aaPredicted RBP6.46□□□□□ -1.38
UPF3A-205ENST00000479712 NLRC4Q9NPP4 1024 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 RTEL1Q9NZ71 1219 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 CALCOCO1Q9P1Z2 691 aa6.46□□□□□ -1.38
UPF3A-205ENST00000479712 MYBBP1AQ9BQG0 1328 aaKnown RBP6.46□□□□□ -1.38
UPF3A-205ENST00000479712 TOX4O94842 621 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 GASTP01350 101 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 ZNF888P0CJ79 500 aaPredicted RBP6.45□□□□□ -1.38
UPF3A-205ENST00000479712 GYPEP15421 78 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 SERPINB3P29508 390 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 CSF2RBP32927 897 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 ALDH5A1P51649 535 aaPredicted RBP6.45□□□□□ -1.38
UPF3A-205ENST00000479712 NKX6-1P78426 367 aaPredicted RBP6.45□□□□□ -1.38
UPF3A-205ENST00000479712 TLE1Q04724 770 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 DUSP2Q05923 314 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 IFIT5Q13325 482 aaKnown RBP6.45□□□□□ -1.38
UPF3A-205ENST00000479712 FGL2Q14314 439 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 POLD3Q15054 466 aaPredicted RBP6.45□□□□□ -1.38
UPF3A-205ENST00000479712 APOA5Q6Q788 366 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 SYDE1Q6ZW31 735 aaPredicted RBP6.45□□□□□ -1.38
UPF3A-205ENST00000479712 USP50Q70EL3 339 aaPredicted RBP6.45□□□□□ -1.38
UPF3A-205ENST00000479712 GPR155Q7Z3F1 870 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 FAM186BQ8IYM0 893 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 ZGPATQ8N5A5 531 aaKnown RBP6.45□□□□□ -1.38
UPF3A-205ENST00000479712 SH2D3CQ8N5H7 860 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 LILRA3Q8N6C8 439 aaPredicted RBP6.45□□□□□ -1.38
UPF3A-205ENST00000479712 KCNH5Q8NCM2 988 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 IFI44Q8TCB0 444 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 ZNF333Q96JL9 665 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 OR10A2Q9H208 303 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 ZMAT3Q9HA38 289 aaKnown RBP6.45□□□□□ -1.38
UPF3A-205ENST00000479712 TMEM140Q9NV12 185 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 ABCF2Q9UG63 623 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 PUF60Q9UHX1 559 aaKnown RBP6.45□□□□□ -1.38
UPF3A-205ENST00000479712 FEZ2Q9UHY8 353 aaPredicted RBP6.45□□□□□ -1.38
UPF3A-205ENST00000479712 AJAP1Q9UKB5 411 aaPredicted RBP6.45□□□□□ -1.38
UPF3A-205ENST00000479712 SLX4Q8IY92 1834 aa6.45□□□□□ -1.38
UPF3A-205ENST00000479712 BCORQ6W2J9 1755 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 MTSS1O43312 755 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 GPR32O75388 356 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 AMY1AP04745 511 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 MED14OSP0DP75 135 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 TYRP14679 529 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 DDCP20711 480 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 SMARCA1P28370 1054 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 SARSP49591 514 aaKnown RBP6.44□□□□□ -1.38
UPF3A-205ENST00000479712 BPIFB4P59827 614 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 PLS1Q14651 629 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 LRIT3Q3SXY7 679 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 ZMAT1Q5H9K5 638 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 KRT40Q6A162 431 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 MCTP2Q6DN12 878 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 TOGARAM2Q6ZUX3 1019 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 USP30Q70CQ3 517 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 TRMT2AQ8IZ69 625 aaKnown RBP6.44□□□□□ -1.38
UPF3A-205ENST00000479712 KRT78Q8N1N4 520 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 KLHL36Q8N4N3 616 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 REPS2Q8NFH8 660 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 FBXO18Q8NFZ0 1043 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 PIGBQ92521 554 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 CDX2Q99626 313 aaPredicted RBP6.44□□□□□ -1.38
UPF3A-205ENST00000479712 C22orf23Q9BZE7 217 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 PNPOQ9NVS9 261 aa6.44□□□□□ -1.38
UPF3A-205ENST00000479712 CNOT6Q9ULM6 557 aaKnown RBP6.44□□□□□ -1.38
UPF3A-205ENST00000479712 TPCN1Q9ULQ1 816 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms