RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 ARMCX5Q6P1M9 558 aa18.68■□□□□ 0.58
VIM-204ENST00000478746 TTC9BQ8N6N2 239 aa18.68■□□□□ 0.58
VIM-204ENST00000478746 KIF12Q96FN5 646 aa18.68■□□□□ 0.58
VIM-204ENST00000478746 C17orf75Q9HAS0 396 aa18.68■□□□□ 0.58
VIM-204ENST00000478746 NUP210Q8TEM1 1887 aaPredicted RBP18.68■□□□□ 0.58
VIM-204ENST00000478746 SFI1A8K8P3 1242 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 E9PMD0 336 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 TRDMT1O14717 391 aaKnown RBP18.67■□□□□ 0.58
VIM-204ENST00000478746 CLDN3O15551 220 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 LARGE1O95461 756 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 CXCL8P10145 99 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 AARSP49588 968 aaKnown RBP eCLIP18.67■□□□□ 0.58
VIM-204ENST00000478746 FXR2P51116 673 aaKnown RBP eCLIP18.67■□□□□ 0.58
VIM-204ENST00000478746 CYP4F8P98187 520 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 GUCY1B3Q02153 619 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 RUNX3Q13761 415 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 PDIA5Q14554 519 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 ELF2Q15723 593 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 ZBTB6Q15916 424 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 TCEAL6Q6IPX3 200 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 TCEAL3Q969E4 200 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 GCNAQ96QF7 691 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 NTPCRQ9BSD7 190 aaKnown RBP18.67■□□□□ 0.58
VIM-204ENST00000478746 EDEM2Q9BV94 578 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 SLC46A2Q9BY10 475 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 SMG9Q9H0W8 520 aaKnown RBP18.67■□□□□ 0.58
VIM-204ENST00000478746 DUSP15Q9H1R2 295 aaPredicted RBP18.67■□□□□ 0.58
VIM-204ENST00000478746 POLR3BQ9NW08 1133 aaPredicted RBP18.67■□□□□ 0.58
VIM-204ENST00000478746 HSFX1Q9UBD0 423 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 UBQLN1Q9UMX0 589 aaKnown RBP18.67■□□□□ 0.58
VIM-204ENST00000478746 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.67■□□□□ 0.58
VIM-204ENST00000478746 STK24Q9Y6E0 443 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 ZZEF1O43149 2961 aa18.67■□□□□ 0.58
VIM-204ENST00000478746 C4orf47A7E2U8 309 aa18.66■□□□□ 0.58
VIM-204ENST00000478746 GIPC1O14908 333 aa18.66■□□□□ 0.58
VIM-204ENST00000478746 RHOBTB1O94844 696 aa18.66■□□□□ 0.58
VIM-204ENST00000478746 TYMPP19971 482 aa18.66■□□□□ 0.58
VIM-204ENST00000478746 CYP3A5P20815 502 aa18.66■□□□□ 0.58
VIM-204ENST00000478746 CDC25CP30307 473 aa18.66■□□□□ 0.58
VIM-204ENST00000478746 MATR3P43243 847 aaKnown RBP eCLIP18.66■□□□□ 0.58
VIM-204ENST00000478746 TUFMP49411 452 aaKnown RBP18.66■□□□□ 0.58
VIM-204ENST00000478746 AMPD2Q01433 879 aa18.66■□□□□ 0.58
VIM-204ENST00000478746 CREB5Q02930 508 aa18.66■□□□□ 0.58
VIM-204ENST00000478746 VEPH1Q14D04 833 aa18.66■□□□□ 0.58
VIM-204ENST00000478746 DAB2IPQ5VWQ8 1189 aa18.66■□□□□ 0.58
VIM-204ENST00000478746 KDF1Q8NAX2 398 aaPredicted RBP18.66■□□□□ 0.58
VIM-204ENST00000478746 SNX29Q8TEQ0 813 aa18.66■□□□□ 0.58
VIM-204ENST00000478746 LPIN3Q9BQK8 851 aa18.66■□□□□ 0.58
VIM-204ENST00000478746 FAM83CQ9BQN1 747 aa18.66■□□□□ 0.58
VIM-204ENST00000478746 KCNG1Q9UIX4 513 aa18.66■□□□□ 0.58
VIM-204ENST00000478746 EML5Q05BV3 1969 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 TTC26A0AVF1 554 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 XPOTO43592 962 aaKnown RBP18.65■□□□□ 0.58
VIM-204ENST00000478746 RNF40O75150 1001 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 CAVIN2O95810 425 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 EGFP01133 1207 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 CLTAP09496 248 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 MCL1Q07820 350 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 FOXC1Q12948 553 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 MAPK7Q13164 816 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 TAF12Q16514 161 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 TTC38Q5R3I4 469 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 RINT1Q6NUQ1 792 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 C1orf186Q6ZWK4 172 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 CMTM8Q8IZV2 173 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 HHIPQ96QV1 700 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 SEPT5Q99719 369 aaPredicted RBP18.65■□□□□ 0.58
VIM-204ENST00000478746 RUSC1Q9BVN2 902 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 EBF3Q9H4W6 596 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 IL21Q9HBE4 155 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 HPS4Q9NQG7 708 aa18.65■□□□□ 0.58
VIM-204ENST00000478746 GALK1P51570 392 aa18.64■□□□□ 0.57
VIM-204ENST00000478746 SMTNP53814 917 aa18.64■□□□□ 0.57
VIM-204ENST00000478746 MGAT5BQ3V5L5 792 aa18.64■□□□□ 0.57
VIM-204ENST00000478746 TRIM68Q6AZZ1 485 aa18.64■□□□□ 0.57
VIM-204ENST00000478746 ZPBP2Q6X784 338 aa18.64■□□□□ 0.57
VIM-204ENST00000478746 C4orf32Q8N8J7 132 aa18.64■□□□□ 0.57
VIM-204ENST00000478746 SPIRE2Q8WWL2 714 aa18.64■□□□□ 0.57
VIM-204ENST00000478746 SENP8Q96LD8 212 aa18.64■□□□□ 0.57
VIM-204ENST00000478746 ZMYM5Q9UJ78 669 aa18.64■□□□□ 0.57
VIM-204ENST00000478746 BCLAF3A2AJT9 711 aaKnown RBP18.63■□□□□ 0.57
VIM-204ENST00000478746 OTOL1A6NHN0 477 aaPredicted RBP18.63■□□□□ 0.57
VIM-204ENST00000478746 LACTBL1A8MY62 500 aa18.63■□□□□ 0.57
VIM-204ENST00000478746 DCLK1O15075 740 aa18.63■□□□□ 0.57
VIM-204ENST00000478746 ODC1P11926 461 aa18.63■□□□□ 0.57
VIM-204ENST00000478746 HOXB3P14651 431 aaPredicted RBP18.63■□□□□ 0.57
VIM-204ENST00000478746 SPINK2P20155 84 aa18.63■□□□□ 0.57
VIM-204ENST00000478746 DRD1P21728 446 aa18.63■□□□□ 0.57
VIM-204ENST00000478746 AVPR1AP37288 418 aa18.63■□□□□ 0.57
VIM-204ENST00000478746 GUCY2FP51841 1108 aa18.63■□□□□ 0.57
VIM-204ENST00000478746 LILRA4P59901 499 aa18.63■□□□□ 0.57
VIM-204ENST00000478746 PPP2R3AQ06190 1150 aa18.63■□□□□ 0.57
VIM-204ENST00000478746 ZNF252P-AS1Q0IIN9 211 aa18.63■□□□□ 0.57
VIM-204ENST00000478746 KARSQ15046 597 aaKnown RBP18.63■□□□□ 0.57
VIM-204ENST00000478746 FBXO43Q4G163 708 aa18.63■□□□□ 0.57
VIM-204ENST00000478746 SLC39A12Q504Y0 691 aa18.63■□□□□ 0.57
VIM-204ENST00000478746 SH3PXD2AQ5TCZ1 1133 aa18.63■□□□□ 0.57
VIM-204ENST00000478746 TMEM161BQ8NDZ6 487 aa18.63■□□□□ 0.57
VIM-204ENST00000478746 GIPC2Q8TF65 315 aa18.63■□□□□ 0.57
VIM-204ENST00000478746 TIPINQ9BVW5 301 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms