RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 FRMD4BQ9Y2L6 1034 aa16.76■□□□□ 0.27
HMGA1-206ENST00000478214 MTMR11A4FU01 709 aa16.75■□□□□ 0.27
HMGA1-206ENST00000478214 FSHRP23945 695 aa16.75■□□□□ 0.27
HMGA1-206ENST00000478214 CLDN10P78369 228 aa16.75■□□□□ 0.27
HMGA1-206ENST00000478214 DUSP4Q13115 394 aa16.75■□□□□ 0.27
HMGA1-206ENST00000478214 SLC39A12Q504Y0 691 aa16.75■□□□□ 0.27
HMGA1-206ENST00000478214 COBLL1Q53SF7 1204 aa16.75■□□□□ 0.27
HMGA1-206ENST00000478214 TDRD10Q5VZ19 366 aaKnown RBP16.75■□□□□ 0.27
HMGA1-206ENST00000478214 CENPPQ6IPU0 288 aa16.75■□□□□ 0.27
HMGA1-206ENST00000478214 GET4Q7L5D6 327 aaPredicted RBP16.75■□□□□ 0.27
HMGA1-206ENST00000478214 LRRTM3Q86VH5 581 aa16.75■□□□□ 0.27
HMGA1-206ENST00000478214 OSTM1Q86WC4 334 aa16.75■□□□□ 0.27
HMGA1-206ENST00000478214 PLCD3Q8N3E9 789 aa16.75■□□□□ 0.27
HMGA1-206ENST00000478214 TOP6BLQ8N6T0 577 aa16.75■□□□□ 0.27
HMGA1-206ENST00000478214 ATAD1Q8NBU5 361 aa16.75■□□□□ 0.27
HMGA1-206ENST00000478214 ZCWPW1Q9H0M4 648 aa16.75■□□□□ 0.27
HMGA1-206ENST00000478214 MAN1B1Q9UKM7 699 aa16.75■□□□□ 0.27
HMGA1-206ENST00000478214 SLC27A5Q9Y2P5 690 aa16.75■□□□□ 0.27
HMGA1-206ENST00000478214 PHACTR2O75167 634 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 ASGR2P07307 311 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 RPL13P26373 211 aaKnown RBP16.74■□□□□ 0.27
HMGA1-206ENST00000478214 MYL6P60660 151 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 TWF1Q12792 350 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 ADAM9Q13443 819 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 BIRC3Q13489 604 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 TRPC3Q13507 836 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 SOWAHAQ2M3V2 549 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 EDRF1Q3B7T1 1238 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 PABPC1LQ4VXU2 614 aaKnown RBP16.74■□□□□ 0.27
HMGA1-206ENST00000478214 LIMS2Q7Z4I7 341 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 ADGRF2Q8IZF7 708 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 TMEM86AQ8N2M4 240 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 TTC9BQ8N6N2 239 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 ITFG1Q8TB96 612 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 TMC2Q8TDI7 906 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 EEF2KMTQ96G04 330 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 YIPF1Q9Y548 306 aa16.74■□□□□ 0.27
HMGA1-206ENST00000478214 DENND4AQ7Z401 1863 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 TSC2P49815 1807 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 TRIOO75962 3097 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 FAM86C2PA6NEL3 165 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 MAPK13O15264 365 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 HCRTO43612 131 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 SOAT2O75908 522 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 C4BPAP04003 597 aaKnown RBP16.73■□□□□ 0.27
HMGA1-206ENST00000478214 RHOP08100 348 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 ACAT1P24752 427 aaKnown RBP16.73■□□□□ 0.27
HMGA1-206ENST00000478214 AP3M2P53677 418 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 PMS1P54277 932 aaKnown RBP16.73■□□□□ 0.27
HMGA1-206ENST00000478214 PTPN21Q16825 1174 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 C1orf220Q5T0J3 134 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 FAM186BQ8IYM0 893 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 ADSSL1Q8N142 457 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 CORO1BQ9BR76 489 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 C1QTNF1Q9BXJ1 281 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 GTPBP4Q9BZE4 634 aaKnown RBP16.73■□□□□ 0.27
HMGA1-206ENST00000478214 XYLT2Q9H1B5 865 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 C11orf16Q9NQ32 467 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 TMLHEQ9NVH6 421 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 DDX43Q9NXZ2 648 aaKnown RBP16.73■□□□□ 0.27
HMGA1-206ENST00000478214 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.73■□□□□ 0.279e-9■■■□□ 17.2
HMGA1-206ENST00000478214 CEP72Q9P209 647 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 EPS15L1Q9UBC2 864 aa16.73■□□□□ 0.27
HMGA1-206ENST00000478214 DOCK6Q96HP0 2047 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 BIN1O00499 593 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 GABRDO14764 452 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 VNN1O95497 513 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 TRIM49P0CI25 452 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 TRIM49CP0CI26 452 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 PTPN2P17706 415 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 BMP6P22004 513 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 PSMC2P35998 433 aaKnown RBP16.72■□□□□ 0.27
HMGA1-206ENST00000478214 VAMP7P51809 220 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 MYL7Q01449 175 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 TSPY1Q01534 308 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 WDR72Q3MJ13 1102 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 ANKRD40Q6AI12 368 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 INTS8Q75QN2 995 aaKnown RBP16.72■□□□□ 0.27
HMGA1-206ENST00000478214 DPH6Q7L8W6 267 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 DCP1BQ8IZD4 617 aaKnown RBP16.72■□□□□ 0.27
HMGA1-206ENST00000478214 SPATA18Q8TC71 538 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 KBTBD7Q8WVZ9 684 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 EDAQ92838 391 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 MMS19Q96T76 1030 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 ACBD6Q9BR61 282 aa16.72■□□□□ 0.27
HMGA1-206ENST00000478214 TRIM49BA6NDI0 452 aa16.71■□□□□ 0.27
HMGA1-206ENST00000478214 IKBKBO14920 756 aa16.71■□□□□ 0.27
HMGA1-206ENST00000478214 CETN3O15182 167 aa16.71■□□□□ 0.27
HMGA1-206ENST00000478214 STAU1O95793 577 aaKnown RBP16.71■□□□□ 0.27
HMGA1-206ENST00000478214 LAMP2P13473 410 aa16.71■□□□□ 0.27
HMGA1-206ENST00000478214 KRT13P13646 458 aa16.71■□□□□ 0.27
HMGA1-206ENST00000478214 CD44P16070 742 aaKnown RBP16.71■□□□□ 0.27
HMGA1-206ENST00000478214 LMO2P25791 158 aa16.71■□□□□ 0.27
HMGA1-206ENST00000478214 ATICP31939 592 aa16.71■□□□□ 0.27
HMGA1-206ENST00000478214 ALDH1A3P47895 512 aa16.71■□□□□ 0.27
HMGA1-206ENST00000478214 LHX1P48742 406 aa16.71■□□□□ 0.27
HMGA1-206ENST00000478214 ZXDAP98168 799 aa16.71■□□□□ 0.27
HMGA1-206ENST00000478214 SMARCB1Q12824 385 aa16.71■□□□□ 0.27
HMGA1-206ENST00000478214 NCOA4Q13772 614 aa16.71■□□□□ 0.27
HMGA1-206ENST00000478214 MORC3Q14149 939 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms