RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 PCBP1Q15365 356 aaKnown RBP eCLIP7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 MLANAQ16655 118 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 CLLU1OSQ5K130 101 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 LRRC55Q6ZSA7 311 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 FERMT3Q86UX7 667 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 NOSTRINQ8IVI9 506 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 RNF149Q8NC42 400 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 FBXO18Q8NFZ0 1043 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 MICAL1Q8TDZ2 1067 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 MRPS27Q92552 414 aaKnown RBP7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 ZNF558Q96NG5 402 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 DUSP23Q9BVJ7 150 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 TMEM60Q9H2L4 133 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 TUFT1Q9NNX1 390 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 PRDM7Q9NQW5 492 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 AGPAT5Q9NUQ2 364 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 FAM53CQ9NYF3 392 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 PUF60Q9UHX1 559 aaKnown RBP7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 NOL7Q9UMY1 257 aaKnown RBP7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 LZTS1Q9Y250 596 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 MYH11P35749 1972 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 ZNF623O75123 536 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 ERLIN2O94905 339 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 XRCC6P12956 609 aaKnown RBP eCLIP7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 IL9P15248 144 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 LIG1P18858 919 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 ITPKAP23677 461 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 AXLP30530 894 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 GTF2F1P35269 517 aaKnown RBP eCLIP7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 LTBRP36941 435 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 TECP42680 631 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 NRIP1P48552 1158 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 TRAPPC10P48553 1259 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 ALDH7A1P49419 539 aaKnown RBP7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 RARRES1P49788 294 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 NDUFV1P49821 464 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 PLCB3Q01970 1234 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 KRT17Q04695 432 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 POU5F1BQ06416 359 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 ADAM15Q13444 863 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 ZNF174Q15697 407 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 TTC38Q5R3I4 469 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 KCNT2Q6UVM3 1135 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 GLB1LQ6UWU2 654 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 FAM214BQ7L5A3 538 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 ADGRD2Q7Z7M1 963 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 RBM23Q86U06 439 aaKnown RBP7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 FAM178BQ8IXR5 827 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 EFHBQ8N7U6 833 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 ERMNQ8TAM6 284 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 PGBD4Q96DM1 585 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 CDCA3Q99618 268 aaPredicted RBP7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 CCDC86Q9H6F5 360 aaKnown RBP7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 TLE6Q9H808 572 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 XPNPEP1Q9NQW7 623 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 SPG21Q9NZD8 308 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 CD207Q9UJ71 328 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 KIF3AQ9Y496 699 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 BDP1A6H8Y1 2624 aa7.54□□□□□ -1.2
CCDC88A-213ENST00000476903 INO80B-WBP1J3KQ70 363 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 LINC01565O15544 149 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 USO1O60763 962 aaKnown RBP7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 TBX10O75333 385 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 SRGAP2BP0DMP2 458 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 U2AF2P26368 475 aaKnown RBP eCLIP7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 RPA1P27694 616 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 PBX3P40426 434 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 MCM2P49736 904 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 BCAR1P56945 870 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 PTENP60484 403 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 ERVFC1P60507 584 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 RNASELQ05823 741 aaKnown RBP7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 DLX2Q07687 328 aaPredicted RBP7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 NCBP1Q09161 790 aaKnown RBP7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 SMAD4Q13485 552 aaKnown RBP7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 BMS1Q14692 1282 aaKnown RBP7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 CLUL1Q15846 466 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 DUSP6Q16828 381 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 LONRF3Q496Y0 759 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 NOMO2Q5JPE7 1267 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 KIAA0319Q5VV43 1072 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 FYB2Q5VWT5 728 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 PLPP4Q5VZY2 271 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 HAUS3Q68CZ6 603 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 CATSPER3Q86XQ3 398 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 LRRC56Q8IYG6 542 aaPredicted RBP7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 SMYD4Q8IYR2 804 aaPredicted RBP7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 SLC39A11Q8N1S5 342 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 MCPH1Q8NEM0 835 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 URGCPQ8TCY9 931 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 PIGOQ8TEQ8 1089 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 LPPQ93052 612 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 CCDC51Q96ER9 411 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 LIN37Q96GY3 246 aaPredicted RBP7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 ARID3AQ99856 593 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 TCF25Q9BQ70 676 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 POLR3CQ9BUI4 534 aaPredicted RBP7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 C1QTNF1Q9BXJ1 281 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 NFKBIZQ9BYH8 718 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 MINDY3Q9H8M7 445 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms