RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 SYT1P21579 422 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 GDI1P31150 447 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 EPHB3P54753 998 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 WNT7BP56706 349 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 MTAPQ13126 283 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ADALQ6DHV7 355 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ERMP1Q7Z2K6 904 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SFR1Q86XK3 245 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 NT5DC4Q86YG4 428 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 EFCAB13Q8IY85 973 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 KRI1Q8N9T8 703 aaKnown RBP13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ZSWIM2Q8NEG5 633 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 CLIC6Q96NY7 704 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 IL21Q9HBE4 155 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 DPP3Q9NY33 737 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SEL1LQ9UBV2 794 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 A0A1W2PRU2 124 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 CHADO15335 359 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 CHRNB1P11230 501 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ALDH1A3P47895 512 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ID4P47928 161 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 CSTF1Q05048 431 aaKnown RBP13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 POSTNQ15063 836 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 WDR44Q5JSH3 913 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 STXBP5Q5T5C0 1151 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ARMCX5Q6P1M9 558 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 FAM173BQ6P4H8 233 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 DYMQ7RTS9 669 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ARID3BQ8IVW6 561 aaPredicted RBP13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 KCNG4Q8TDN1 519 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 RUBCNQ92622 972 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 FAM212AQ96EL1 285 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 IER2Q9BTL4 223 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ZHX3Q9H4I2 956 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 OLFML3Q9NRN5 406 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ZSCAN32Q9NX65 697 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 OBP2AQ9NY56 170 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 DSEQ9UL01 958 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 OBSL1O75147 1896 aa13.25□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ZNF638Q14966 1978 aaKnown RBP13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 A0A087X0B3 334 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 VPS37CA5D8V6 355 aaPredicted RBP13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 CYB561D2O14569 222 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ZNF263O14978 683 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 KINO60870 393 aaKnown RBP13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SOAT2O75908 522 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 IL18RAPO95256 599 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 GAP43P17677 238 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ATF6P18850 670 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 TUFMP49411 452 aaKnown RBP13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 TAF6P49848 677 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SMARCB1Q12824 385 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 GAS6Q14393 721 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SLC39A14Q15043 492 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 L1TD1Q5T7N2 865 aaKnown RBP13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 RRAGBQ5VZM2 374 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 WSCD1Q658N2 575 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SCARA3Q6AZY7 606 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SV2BQ7L1I2 683 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 TMEM150AQ86TG1 271 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 DCLK2Q8N568 766 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 C2orf15Q8WU43 125 aaKnown RBP13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 FAM3CQ92520 227 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 INTS4Q96HW7 963 aaKnown RBP13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 FAM126AQ9BYI3 521 aaPredicted RBP13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 EPC1Q9H2F5 836 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 CCDC39Q9UFE4 941 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 PIAS3Q9Y6X2 628 aa13.24□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 MYBPHLA2RUH7 354 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 KPNA7A9QM74 516 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 FGF19O95750 216 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 HAPLN1P10915 354 aaPredicted RBP13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 HMGA1P17096 107 aaKnown RBP13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 GARTP22102 1010 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 TGM1P22735 817 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 CASP5P51878 434 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 TSSK4Q6SA08 328 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 LIMS2Q7Z4I7 341 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ITIH5Q86UX2 942 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 BRSK2Q8IWQ3 736 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 RASSF8Q8NHQ8 419 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SPPL2BQ8TCT7 592 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 POMGNT1Q8WZA1 660 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 RMDN1Q96DB5 314 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 MSANTD3Q96H12 275 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 USP28Q96RU2 1077 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 LPIN3Q9BQK8 851 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 PYM1Q9BRP8 204 aaKnown RBP13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 FGFBP2Q9BYJ0 223 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 C8orf33Q9H7E9 229 aaPredicted RBP13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 LMAN1LQ9HAT1 526 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 MTMR6Q9Y217 621 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 GREB1Q4ZG55 1949 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ANAPC1Q9H1A4 1944 aa13.23□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 F11P03951 625 aa13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 CCNE1P24864 410 aa13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 GABRR2P28476 465 aa13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 NASPP49321 788 aaPredicted RBP13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SLC39A12Q504Y0 691 aa13.22□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 C1orf228Q6PIY5 440 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms