RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 TBC1D22BQ9NU19 505 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 GMIPQ9P107 970 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 WRAP73Q9P2S5 460 aaPredicted RBP5.33□□□□□ -1.56
USP4-209ENST00000475873 FBXL5Q9UKA1 691 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 CIZ1Q9ULV3 898 aaPredicted RBP5.33□□□□□ -1.56
USP4-209ENST00000475873 SAMM50Q9Y512 469 aa5.33□□□□□ -1.56
USP4-209ENST00000475873 OBSL1O75147 1896 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 ARID1BQ8NFD5 2236 aaPredicted RBP5.32□□□□□ -1.56
USP4-209ENST00000475873 MYOFQ9NZM1 2061 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 IGHV1OR15-9A0A0B4J2B8 117 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 A0A1W2PQD8 194 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 DPYSL4O14531 572 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 IFIT3O14879 490 aaKnown RBP5.32□□□□□ -1.56
USP4-209ENST00000475873 TBX3O15119 743 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 SUV39H1O43463 412 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 CHMP2AO43633 222 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 CILPO75339 1184 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 SOAT2O75908 522 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 RECQL4O94761 1208 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 B3GAT3O94766 335 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 SYPP08247 313 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 CYP3A4P08684 503 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 ITGB6P18564 788 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 MAOBP27338 520 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 SMARCA1P28370 1054 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 WEE1P30291 646 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 ZNF76P36508 570 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 OPRD1P41143 372 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 DNM2P50570 870 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 PTENP60484 403 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 RPL6Q02878 288 aaKnown RBP5.32□□□□□ -1.56
USP4-209ENST00000475873 MBTD1Q05BQ5 628 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 UPP1Q16831 310 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 PLEKHG6Q3KR16 790 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 PRR16Q569H4 304 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 XKR3Q5GH77 459 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 GLRA4Q5JXX5 417 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 C6orf132Q5T0Z8 1188 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 EMC10Q5UCC4 262 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 USP49Q70CQ1 688 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 HEATR3Q7Z4Q2 680 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 TMEM150AQ86TG1 271 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 RAB11FIP4Q86YS3 637 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 ZNF654Q8IZM8 581 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 ALLCQ8N6M5 410 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 IL17RCQ8NAC3 791 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 OXER1Q8TDS5 423 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 IGDCC4Q8TDY8 1250 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 WHAMMQ8TF30 809 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 HMGB4Q8WW32 186 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 USP13Q92995 863 aaPredicted RBP5.32□□□□□ -1.56
USP4-209ENST00000475873 CD101Q93033 1021 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 CCDC51Q96ER9 411 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 TMEM176AQ96HP8 235 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 HIC2Q96JB3 615 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 HSPA12BQ96MM6 686 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 TBC1D32Q96NH3 1257 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 PNMA5Q96PV4 448 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 DHX33Q9H6R0 707 aaKnown RBP5.32□□□□□ -1.56
USP4-209ENST00000475873 ECT2Q9H8V3 914 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 XPNPEP1Q9NQW7 623 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 TM7SF3Q9NS93 570 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 PARP2Q9UGN5 583 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 SEC63Q9UGP8 760 aaKnown RBP5.32□□□□□ -1.56
USP4-209ENST00000475873 AFF4Q9UHB7 1163 aaKnown RBP5.32□□□□□ -1.56
USP4-209ENST00000475873 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.32□□□□□ -1.56
USP4-209ENST00000475873 SSUH2Q9Y2M2 353 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 GTF3C3Q9Y5Q9 886 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 SLCO1B1Q9Y6L6 691 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 ZNF638Q14966 1978 aaKnown RBP5.32□□□□□ -1.56
USP4-209ENST00000475873 MED13Q9UHV7 2174 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 HIVEP1P15822 2718 aa5.32□□□□□ -1.56
USP4-209ENST00000475873 ANK1P16157 1881 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 A0A1B0GUA9 196 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 ESYT2A0FGR8 921 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 BLACEA4D250 179 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 CBX4O00257 560 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 MSH4O15457 936 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 ERLIN2O94905 339 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 AFPP02771 609 aaKnown RBP5.31□□□□□ -1.56
USP4-209ENST00000475873 ITGB2P05107 769 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 EDN1P05305 212 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 THP07101 528 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 OR4Q2P0C623 313 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 ZNF883P0CG24 379 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 GABRR2P28476 465 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 AXLP30530 894 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 DPP6P42658 865 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 TARDBPQ13148 414 aaKnown RBP eCLIP5.31□□□□□ -1.56
USP4-209ENST00000475873 NUMA1Q14980 2115 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 TBC1D25Q3MII6 688 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 PREPLQ4J6C6 727 aaPredicted RBP5.31□□□□□ -1.56
USP4-209ENST00000475873 JAKMIP3Q5VZ66 844 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 TPGS2Q68CL5 300 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 DNAJB7Q7Z6W7 309 aaPredicted RBP5.31□□□□□ -1.56
USP4-209ENST00000475873 FERMT3Q86UX7 667 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 SGMS1Q86VZ5 419 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 TMPRSS12Q86WS5 348 aa5.31□□□□□ -1.56
USP4-209ENST00000475873 IFNLR1Q8IU57 520 aaPredicted RBP5.31□□□□□ -1.56
USP4-209ENST00000475873 ELMOD1Q8N336 334 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms