RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 APOBEC3GQ9HC16 384 aaKnown RBP7.53□□□□□ -1.2
LIMD1-204ENST00000474665 AAASQ9NRG9 546 aa7.53□□□□□ -1.2
LIMD1-204ENST00000474665 FANCLQ9NW38 375 aa7.53□□□□□ -1.2
LIMD1-204ENST00000474665 CLEC1BQ9P126 229 aa7.53□□□□□ -1.2
LIMD1-204ENST00000474665 ARMCX3Q9UH62 379 aaPredicted RBP7.53□□□□□ -1.2
LIMD1-204ENST00000474665 AGAP1Q9UPQ3 857 aa7.53□□□□□ -1.2
LIMD1-204ENST00000474665 LZTS1Q9Y250 596 aa7.53□□□□□ -1.2
LIMD1-204ENST00000474665 NFE2L3Q9Y4A8 694 aa7.53□□□□□ -1.2
LIMD1-204ENST00000474665 USP15Q9Y4E8 981 aaPredicted RBP7.53□□□□□ -1.2
LIMD1-204ENST00000474665 NME7Q9Y5B8 376 aa7.53□□□□□ -1.2
LIMD1-204ENST00000474665 C2orf71A6NGG8 1288 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 TULP1O00294 542 aaPredicted RBP7.52□□□□□ -1.21
LIMD1-204ENST00000474665 PI15O43692 258 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 TBC1D4O60343 1298 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 TADA2AO75478 443 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 LETM1O95202 739 aaPredicted RBP7.52□□□□□ -1.21
LIMD1-204ENST00000474665 HLA-DRAP01903 254 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 SOD2P04179 222 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 TMEM191BP0C7N4 346 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 CTSAP10619 480 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 ATP1A3P13637 1013 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 TKTP29401 623 aaKnown RBP7.52□□□□□ -1.21
LIMD1-204ENST00000474665 ZNF165P49910 485 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 RBP5P82980 135 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 RBM10P98175 930 aaKnown RBP7.52□□□□□ -1.21
LIMD1-204ENST00000474665 DSG1Q02413 1049 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 UBE3AQ05086 875 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 MRPL58Q14197 206 aaKnown RBP7.52□□□□□ -1.21
LIMD1-204ENST00000474665 PTPN14Q15678 1187 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 FAM171A1Q5VUB5 890 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 SPOPLQ6IQ16 392 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 PRSS55Q6UWB4 352 aaPredicted RBP7.52□□□□□ -1.21
LIMD1-204ENST00000474665 ADGRD2Q7Z7M1 963 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 OSTM1Q86WC4 334 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 AOPEPQ8N6M6 819 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 MRPL43Q8N983 215 aaKnown RBP7.52□□□□□ -1.21
LIMD1-204ENST00000474665 LNX1Q8TBB1 728 aaPredicted RBP7.52□□□□□ -1.21
LIMD1-204ENST00000474665 CACTINQ8WUQ7 758 aaKnown RBP7.52□□□□□ -1.21
LIMD1-204ENST00000474665 SENP8Q96LD8 212 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 CNOT6LQ96LI5 555 aaKnown RBP7.52□□□□□ -1.21
LIMD1-204ENST00000474665 FNBP1Q96RU3 617 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 BPIFA3Q9BQP9 254 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 RTP3Q9BQQ7 232 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 PI4K2AQ9BTU6 479 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 HERC2P3Q9BVR0 1158 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 SDCBP2Q9H190 292 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 SMOC2Q9H3U7 446 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 THAP9Q9H5L6 903 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 CBX8Q9HC52 389 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 DACH1Q9UI36 760 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 ITGA11Q9UKX5 1188 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 COQ4Q9Y3A0 265 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 TIMM13Q9Y5L4 95 aaPredicted RBP7.52□□□□□ -1.21
LIMD1-204ENST00000474665 IRAK3Q9Y616 596 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 NOTCH4Q99466 2003 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 PTPRDP23468 1912 aa7.52□□□□□ -1.21
LIMD1-204ENST00000474665 SF3B1O75533 1304 aaKnown RBP eCLIP7.52□□□□□ -1.21
LIMD1-204ENST00000474665 SOBPA7XYQ1 873 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 KPNA7A9QM74 516 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 PMM2O15305 246 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 XPOTO43592 962 aaKnown RBP7.51□□□□□ -1.21
LIMD1-204ENST00000474665 HCRTO43612 131 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 STAU1O95793 577 aaKnown RBP7.51□□□□□ -1.21
LIMD1-204ENST00000474665 GNA14O95837 355 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 ASS1P00966 412 aaKnown RBP7.51□□□□□ -1.21
LIMD1-204ENST00000474665 TNNC2P02585 160 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 CYP11A1P05108 521 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 KRT19P08727 400 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 CNPP09543 421 aaKnown RBP7.51□□□□□ -1.21
LIMD1-204ENST00000474665 KRT13P13646 458 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 RPL17P18621 184 aaKnown RBP7.51□□□□□ -1.21
LIMD1-204ENST00000474665 SP100P23497 879 aaPredicted RBP7.51□□□□□ -1.21
LIMD1-204ENST00000474665 GTF2H1P32780 548 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 FMO5P49326 533 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 TAF6P49848 677 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 AP3M2P53677 418 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 ZNF445P59923 1031 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 MYL5Q02045 173 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 APBA1Q02410 837 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 KCNH2Q12809 1159 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 NCOA4Q13772 614 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 KRT31Q15323 416 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 CCDC142Q17RM4 750 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 SOWAHAQ2M3V2 549 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 CCDC40Q4G0X9 1142 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 TCP11X2Q5H9J9 407 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 DCAF17Q5H9S7 520 aaPredicted RBP7.51□□□□□ -1.21
LIMD1-204ENST00000474665 WSCD1Q658N2 575 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 LUZP1Q86V48 1076 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 GAS2L3Q86XJ1 694 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 LRRC52Q8N7C0 313 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 SMRP1Q8NCR6 262 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 KREMEN2Q8NCW0 462 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 VN1R2Q8NFZ6 395 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 FEZF2Q8TBJ5 459 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 KBTBD7Q8WVZ9 684 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 PIK3R5Q8WYR1 880 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 RUBCNQ92622 972 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 TATDN2Q93075 761 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 HPDLQ96IR7 371 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms