RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 DYNLT1P63172 113 aa20.22■□□□□ 0.83
VIM-203ENST00000469543 TRPC3Q13507 836 aa20.22■□□□□ 0.83
VIM-203ENST00000469543 DUOXA2Q1HG44 320 aa20.22■□□□□ 0.83
VIM-203ENST00000469543 FAM160B1Q5W0V3 765 aa20.22■□□□□ 0.83
VIM-203ENST00000469543 ARHGEF2Q92974 986 aaKnown RBP20.22■□□□□ 0.83
VIM-203ENST00000469543 RBPJLQ9UBG7 517 aa20.22■□□□□ 0.83
VIM-203ENST00000469543 CPSF3Q9UKF6 684 aaKnown RBP20.22■□□□□ 0.83
VIM-203ENST00000469543 PIK3R2O00459 728 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 RFC1P35251 1148 aaPredicted RBP20.21■□□□□ 0.83
VIM-203ENST00000469543 DPH6Q7L8W6 267 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 KATNAL2Q8IYT4 538 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 KIAA0319LQ8IZA0 1049 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 EMC1Q8N766 993 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 UBR7Q8N806 425 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 MRRFQ96E11 262 aaKnown RBP20.21■□□□□ 0.83
VIM-203ENST00000469543 XYLT2Q9H1B5 865 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 NINJ2Q9NZG7 142 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 HMGXB4Q9UGU5 601 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 AGTP01019 485 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 CD19P15391 556 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 ASPAP45381 313 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 C1QBPQ07021 282 aaKnown RBP20.21■□□□□ 0.83
VIM-203ENST00000469543 FASTKD3Q14CZ7 662 aaKnown RBP20.21■□□□□ 0.83
VIM-203ENST00000469543 PLCB4Q15147 1175 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 WDR72Q3MJ13 1102 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 IZUMO3Q5VZ72 239 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 DENND1BQ6P3S1 775 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 ZPBP2Q6X784 338 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 TAX1BP1Q86VP1 789 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 WDR49Q8IV35 697 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 ANKRD42Q8N9B4 389 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 CNOT10Q9H9A5 744 aaKnown RBP20.21■□□□□ 0.83
VIM-203ENST00000469543 ZNF148Q9UQR1 794 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 PAPPA2Q9BXP8 1791 aa20.21■□□□□ 0.83
VIM-203ENST00000469543 OGTO15294 1046 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 PSTPIP1O43586 416 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 POTEJP0CG39 1038 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 GBP1P32455 592 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 CCNG2Q16589 344 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 TNFAIP8L3Q5GJ75 292 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 PPP1R13LQ8WUF5 828 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 SLITRK1Q96PX8 696 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 TMEM121Q9BTD3 319 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 TRAIPQ9BWF2 469 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 KCNG1Q9UIX4 513 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 H0YHG0 523 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 BANF1O75531 89 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 KRT1P04264 644 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 VIMP08670 466 aaKnown RBP20.2■□□□□ 0.82
VIM-203ENST00000469543 NRLP54845 237 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 ENPEPQ07075 957 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 ZNF699Q32M78 642 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 GKAP1Q5VSY0 366 aaPredicted RBP20.2■□□□□ 0.82
VIM-203ENST00000469543 EFCAB12Q6NXP0 572 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 EXD1Q8NHP7 514 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 JOSD2Q8TAC2 188 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 RUNDC3BQ96NL0 473 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 ELAC2Q9BQ52 826 aaKnown RBP20.2■□□□□ 0.82
VIM-203ENST00000469543 ZWILCHQ9H900 591 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 KCNK9Q9NPC2 374 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 TCRBV5S1A1TA0A578 114 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 TMEM120BA0PK00 339 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 LRRD1A4D1F6 860 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 GOLGA8MH3BSY2 632 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 PLCB3Q01970 1234 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 GAD2Q05329 585 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 CNGA2Q16280 664 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 DNAJC24Q6P3W2 148 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 TRIM72Q6ZMU5 477 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 TRMT10CQ7L0Y3 403 aaKnown RBP20.2■□□□□ 0.82
VIM-203ENST00000469543 DHX37Q8IY37 1157 aaKnown RBP20.2■□□□□ 0.82
VIM-203ENST00000469543 CACNA2D3Q8IZS8 1091 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 ARFGAP1Q8N6T3 406 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 GDAP1Q8TB36 358 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 VCPIP1Q96JH7 1222 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 TWNKQ96RR1 684 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 NIF3L1Q9GZT8 377 aa20.2■□□□□ 0.82
VIM-203ENST00000469543 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.2■□□□□ 0.82
VIM-203ENST00000469543 MGAMO43451 1857 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 ECM2O94769 699 aaPredicted RBP20.19■□□□□ 0.82
VIM-203ENST00000469543 IFNB1P01574 187 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 KLRC2P26717 231 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 TTLL12Q14166 644 aaPredicted RBP20.19■□□□□ 0.82
VIM-203ENST00000469543 TAF5Q15542 800 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 SGSM1Q2NKQ1 1148 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 CELF3Q5SZQ8 465 aaKnown RBP20.19■□□□□ 0.82
VIM-203ENST00000469543 IER5Q5VY09 327 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 IP6K2Q9UHH9 426 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 SCINQ9Y6U3 715 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 NFICP08651 508 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 TGFB3P10600 412 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 ABCD1P33897 745 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 EFNA5P52803 228 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 MCL1Q07820 350 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 PTPN20Q4JDL3 420 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 ATF7IP2Q5U623 682 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 ERICH1Q86X53 443 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 CCDC13Q8IYE1 715 aa20.19■□□□□ 0.82
VIM-203ENST00000469543 RBM15Q96T37 977 aaKnown RBP eCLIP20.19■□□□□ 0.822e-11■■□□□ 14.4
VIM-203ENST00000469543 GPR25O00155 361 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms