RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 SMIM10L2AP0DMW4 78 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 SMIM10L2BP0DMW5 78 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 VDRP11473 427 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 DARSP14868 501 aaKnown RBP8.08□□□□□ -1.12
COL6A3-208ENST00000468792 COILP38432 576 aaPredicted RBP8.08□□□□□ -1.12
COL6A3-208ENST00000468792 GGCXP38435 758 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 CETN2P41208 172 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 TM4SF4P48230 202 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 ZNF157P51786 506 aaPredicted RBP8.08□□□□□ -1.12
COL6A3-208ENST00000468792 RAD23BP54727 409 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 RNASE9P60153 205 aaKnown RBP8.08□□□□□ -1.12
COL6A3-208ENST00000468792 LACTBP83111 547 aaPredicted RBP8.08□□□□□ -1.12
COL6A3-208ENST00000468792 SREBF2Q12772 1141 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 KLF1Q13351 362 aaPredicted RBP8.08□□□□□ -1.12
COL6A3-208ENST00000468792 ZNF268Q14587 947 aaPredicted RBP8.08□□□□□ -1.12
COL6A3-208ENST00000468792 TAF1CQ15572 869 aaPredicted RBP8.08□□□□□ -1.12
COL6A3-208ENST00000468792 CNGA2Q16280 664 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 CFAP58Q5T655 872 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 JADE1Q6IE81 842 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 RGMBQ6NW40 437 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 NOTUMQ6P988 496 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 DRICH1Q6PGQ1 229 aaPredicted RBP8.08□□□□□ -1.12
COL6A3-208ENST00000468792 POLNQ7Z5Q5 900 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 RPAINQ86UA6 219 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 SAPCD2Q86UD0 394 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 TLK2Q86UE8 772 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 RCOR2Q8IZ40 523 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 WDTC1Q8N5D0 677 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 CEP120Q8N960 986 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 IFT81Q8WYA0 676 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 CCDC102AQ96A19 550 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 MAGOHBQ96A72 148 aaKnown RBP8.08□□□□□ -1.12
COL6A3-208ENST00000468792 APBA2Q99767 749 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 FRMD8P1Q9BZ68 369 aaPredicted RBP8.08□□□□□ -1.12
COL6A3-208ENST00000468792 TXLNGYQ9BZA5 131 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 TSPYL1Q9H0U9 437 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 ZFYVE28Q9HCC9 887 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.08□□□□□ -1.12
COL6A3-208ENST00000468792 BARX2Q9UMQ3 279 aaPredicted RBP8.08□□□□□ -1.12
COL6A3-208ENST00000468792 NR2E1Q9Y466 385 aa8.08□□□□□ -1.12
COL6A3-208ENST00000468792 RALGAPA2Q2PPJ7 1873 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 TLR3O15455 904 aaKnown RBP8.07□□□□□ -1.12
COL6A3-208ENST00000468792 TTI1O43156 1089 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 ADCY6O43306 1168 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 RNF40O75150 1001 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 DUSP11O75319 330 aaKnown RBP8.07□□□□□ -1.12
COL6A3-208ENST00000468792 PPFIA2O75334 1257 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 ITGB3P05106 788 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 CFHP08603 1231 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 SETSIPP0DME0 302 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 RARAP10276 462 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 KCNE1P15382 129 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 CYP3A5P20815 502 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 CYP2C19P33261 490 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 MARCKSL1P49006 195 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 PSEN2P49810 448 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 CRYBB1P53674 252 aaPredicted RBP8.07□□□□□ -1.12
COL6A3-208ENST00000468792 EIF3BP55884 814 aaKnown RBP8.07□□□□□ -1.12
COL6A3-208ENST00000468792 CAV1Q03135 178 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 PTPN11Q06124 597 aaPredicted RBP8.07□□□□□ -1.12
COL6A3-208ENST00000468792 MYO1EQ12965 1108 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 MKRN3Q13064 507 aaKnown RBP8.07□□□□□ -1.12
COL6A3-208ENST00000468792 MFSD10Q14728 455 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 CCNG2Q16589 344 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 WDR72Q3MJ13 1102 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 TAF2Q6P1X5 1199 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 CCDC137Q6PK04 289 aaKnown RBP8.07□□□□□ -1.12
COL6A3-208ENST00000468792 MMS22LQ6ZRQ5 1243 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 LIMS2Q7Z4I7 341 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 CROCCP2Q86T23 111 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 UNC93AQ86WB7 457 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 ERICH1Q86X53 443 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 JAMLQ86YT9 394 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 TMEM192Q8IY95 271 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 ZDHHC14Q8IZN3 488 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 SLC4A11Q8NBS3 891 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 GRK7Q8WTQ7 553 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 STK32AQ8WU08 396 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 TMEM176AQ96HP8 235 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 HPDLQ96IR7 371 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 RBM41Q96IZ5 413 aaKnown RBP8.07□□□□□ -1.12
COL6A3-208ENST00000468792 FAM84AQ96KN4 292 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 NCAPGQ9BPX3 1015 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 C11orf70Q9BRQ4 267 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 DNAI2Q9GZS0 605 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 AP5M1Q9H0R1 490 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 CYLDQ9NQC7 956 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 ZDHHC18Q9NUE0 388 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 SETD4Q9NVD3 440 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 DPP3Q9NY33 737 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 DDX56Q9NY93 547 aaKnown RBP8.07□□□□□ -1.12
COL6A3-208ENST00000468792 CNTN3Q9P232 1028 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 CPA4Q9UI42 421 aa8.07□□□□□ -1.12
COL6A3-208ENST00000468792 PASKQ96RG2 1323 aa8.06□□□□□ -1.12
COL6A3-208ENST00000468792 ESYT3A0FGR9 886 aa8.06□□□□□ -1.12
COL6A3-208ENST00000468792 ZSCAN5CA6NGD5 496 aaPredicted RBP8.06□□□□□ -1.12
COL6A3-208ENST00000468792 TMEM110-MUSTN1A8MSY1 372 aa8.06□□□□□ -1.12
COL6A3-208ENST00000468792 H0YGN5 161 aa8.06□□□□□ -1.12
COL6A3-208ENST00000468792 NDC80O14777 642 aa8.06□□□□□ -1.12
COL6A3-208ENST00000468792 DAPK3O43293 454 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms