RNA–Protein interactions for RNA: ENST00000467464.1

PTPRF-211, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 571 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-211ENST00000467464 TARSP26639 723 aaKnown RBP12.92□□□□□ -0.34
PTPRF-211ENST00000467464 CDR1P51861 262 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 SLC39A12Q504Y0 691 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 STXBP5Q5T5C0 1151 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 CYP4A22Q5TCH4 519 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 IQCEQ6IPM2 695 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 GAREM2Q75VX8 874 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 DNASE1L2Q92874 299 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 PSMG2Q969U7 264 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 SHDQ96IW2 340 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 ZNF396Q96N95 335 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-211ENST00000467464 OSBPL6Q9BZF3 934 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 CUEDC2Q9H467 287 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 PCIF1Q9H4Z3 704 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 IL21Q9HBE4 155 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 ZFP14Q9HCL3 533 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 HEBP1Q9NRV9 189 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 RBAKQ9NYW8 714 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-211ENST00000467464 L1RE1Q9UN81 338 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 CFAP54Q96N23 3096 aa12.92□□□□□ -0.34
PTPRF-211ENST00000467464 KPNA7A9QM74 516 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 LDHAP00338 332 aaKnown RBP12.91□□□□□ -0.34
PTPRF-211ENST00000467464 F13A1P00488 732 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 ITGB3P05106 788 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 RFX1P22670 979 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 POLR2BP30876 1174 aaKnown RBP12.91□□□□□ -0.34
PTPRF-211ENST00000467464 VIPR2P41587 438 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 TFAMQ00059 246 aaKnown RBP12.91□□□□□ -0.34
PTPRF-211ENST00000467464 PLD1Q13393 1074 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 SV2CQ496J9 727 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 FOXD4L5Q5VV16 416 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-211ENST00000467464 ARMCX5Q6P1M9 558 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 TPRG1Q6ZUI0 275 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 LIMS2Q7Z4I7 341 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 C1orf210Q8IVY1 113 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 CCDC65Q8IXS2 484 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 PDCL2Q8N4E4 241 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 ZSCAN18Q8TBC5 510 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-211ENST00000467464 FOXD4L4Q8WXT5 416 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-211ENST00000467464 CLDN23Q96B33 292 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 DHX58Q96C10 678 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 ZNF560Q96MR9 790 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 LRRC3BQ96PB8 259 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 PKMYT1Q99640 499 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 LPIN3Q9BQK8 851 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 PDE11AQ9HCR9 933 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 TRPV5Q9NQA5 729 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 TMLHEQ9NVH6 421 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 ASB3Q9Y575 518 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 MYH15Q9Y2K3 1946 aa12.91□□□□□ -0.34
PTPRF-211ENST00000467464 EIF3DO15371 548 aaKnown RBP eCLIP12.9□□□□□ -0.34
PTPRF-211ENST00000467464 TGFB1I1O43294 461 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 SP9P0CG40 484 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 HAPLN1P10915 354 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-211ENST00000467464 PSMC3P17980 439 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 CASP1P29466 404 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 PNPLA4P41247 253 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 ALDH1A3P47895 512 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 EPHB3P54753 998 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 CCDC142Q17RM4 750 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 LMBRD2Q68DH5 695 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-211ENST00000467464 DNAJB7Q7Z6W7 309 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-211ENST00000467464 CBWD2Q8IUF1 395 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 SYCP3Q8IZU3 236 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 GPD1LQ8N335 351 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 LRRC52Q8N7C0 313 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 OR5B17Q8NGF7 314 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 C7orf25Q9BPX7 421 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 TRMT61BQ9BVS5 477 aaKnown RBP12.9□□□□□ -0.34
PTPRF-211ENST00000467464 MTMR12Q9C0I1 747 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 GZF1Q9H116 711 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-211ENST00000467464 TMEM206Q9H813 350 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 GDAP2Q9NXN4 497 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 ITGA11Q9UKX5 1188 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 PCDHA7Q9UN72 937 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 AGAP1Q9UPQ3 857 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 ANK1P16157 1881 aa12.9□□□□□ -0.34
PTPRF-211ENST00000467464 FAM170BA6NMN3 283 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 HEPACAM2A8MVW5 462 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 HCRTO43612 131 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 HMGA1P17096 107 aaKnown RBP12.89□□□□□ -0.35
PTPRF-211ENST00000467464 ASIC1P78348 528 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 FCHO2Q0JRZ9 810 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 UBXN2BQ14CS0 331 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 FOXD4L6Q3SYB3 417 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-211ENST00000467464 FAM26FQ5R3K3 315 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 RESP18Q5W5W9 173 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 FOXD4L3Q6VB84 417 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-211ENST00000467464 TMEM150AQ86TG1 271 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 OSTM1Q86WC4 334 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 METTL23Q86XA0 190 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 MFSD6LQ8IWD5 586 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 HSCBQ8IWL3 235 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 IQUBQ8NA54 791 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 ZNF507Q8TCN5 953 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 SPPL2BQ8TCT7 592 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 KCNG4Q8TDN1 519 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 C2orf15Q8WU43 125 aaKnown RBP12.89□□□□□ -0.35
PTPRF-211ENST00000467464 DEPDC1BQ8WUY9 529 aa12.89□□□□□ -0.35
PTPRF-211ENST00000467464 LEO1Q8WVC0 666 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms