RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 HUS1O60921 280 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 SOAT2O75908 522 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 TMEM191BP0C7N4 346 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 SP9P0CG40 484 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 GABRR2P28476 465 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 POLR2BP30876 1174 aaKnown RBP18.9■□□□□ 0.62
COL7A1-206ENST00000466591 CSTF1Q05048 431 aaKnown RBP18.9■□□□□ 0.62
COL7A1-206ENST00000466591 BFSP1Q12934 665 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 PPP2R5DQ14738 602 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 VITQ6UXI7 678 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 DNAJB7Q7Z6W7 309 aaPredicted RBP18.9■□□□□ 0.62
COL7A1-206ENST00000466591 SHKBP1Q8TBC3 707 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 C2orf15Q8WU43 125 aaKnown RBP18.9■□□□□ 0.62
COL7A1-206ENST00000466591 TMEM209Q96SK2 561 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 IKZF4Q9H2S9 585 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 OLFML3Q9NRN5 406 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 AGAP1Q9UPQ3 857 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 PIAS3Q9Y6X2 628 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 MIA3Q5JRA6 1907 aa18.9■□□□□ 0.62
COL7A1-206ENST00000466591 GOLGA8IPA6NC78 632 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 GOLGA8JA6NMD2 632 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 CLSTN1O94985 981 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 ITGB3P05106 788 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 CYP11A1P05108 521 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 GARTP22102 1010 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 FCARP24071 287 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 TARSP26639 723 aaKnown RBP18.89■□□□□ 0.61
COL7A1-206ENST00000466591 EPHA5P54756 1037 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 KCNA1Q09470 495 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 SMARCB1Q12824 385 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 FOXD4L6Q3SYB3 417 aaPredicted RBP18.89■□□□□ 0.61
COL7A1-206ENST00000466591 GPR158Q5T848 1215 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 WSCD1Q658N2 575 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 FOXD4L3Q6VB84 417 aaPredicted RBP18.89■□□□□ 0.61
COL7A1-206ENST00000466591 CSGALNACT2Q8N6G5 542 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 OR10T2Q8NGX3 314 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 ATRIPQ8WXE1 791 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 FAM3CQ92520 227 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 PSMG2Q969U7 264 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 DHX58Q96C10 678 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 DNAJC19Q96DA6 116 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 DDX23Q9BUQ8 820 aaKnown RBP18.89■□□□□ 0.61
COL7A1-206ENST00000466591 PCIF1Q9H4Z3 704 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 ZNF334Q9HCZ1 680 aaPredicted RBP18.89■□□□□ 0.61
COL7A1-206ENST00000466591 DLGAP2Q9P1A6 1054 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 TFIP11Q9UBB9 837 aaKnown RBP18.89■□□□□ 0.61
COL7A1-206ENST00000466591 HSFX1Q9UBD0 423 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 MTF2Q9Y483 593 aaPredicted RBP18.89■□□□□ 0.61
COL7A1-206ENST00000466591 CACNA1HO95180 2353 aa18.89■□□□□ 0.61
COL7A1-206ENST00000466591 EXTL3O43909 919 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 PRPF6O94906 941 aaKnown RBP18.88■□□□□ 0.61
COL7A1-206ENST00000466591 GLULP15104 373 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 CDC25CP30307 473 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 ASIC1P78348 528 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 MYL7Q01449 175 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 GPIHBP1Q8IV16 184 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 MFSD6LQ8IWD5 586 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 BRSK2Q8IWQ3 736 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 EFCAB13Q8IY85 973 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 TTC9BQ8N6N2 239 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 SPPL2BQ8TCT7 592 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 GIPC2Q8TF65 315 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 ANKRD36BP1Q96IX9 119 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 LPIN3Q9BQK8 851 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 ZCWPW1Q9H0M4 648 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 TNMDQ9H2S6 317 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 CRISPLD1Q9H336 500 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 CUEDC2Q9H467 287 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 FBXO4Q9UKT5 387 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 PCDHB5Q9Y5E4 795 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 NOTCH4Q99466 2003 aa18.88■□□□□ 0.61
COL7A1-206ENST00000466591 KIAA0391O15091 583 aaKnown RBP18.87■□□□□ 0.61
COL7A1-206ENST00000466591 PPP1R37O75864 691 aa18.87■□□□□ 0.61
COL7A1-206ENST00000466591 TNNC2P02585 160 aa18.87■□□□□ 0.61
COL7A1-206ENST00000466591 ADSSP30520 456 aa18.87■□□□□ 0.61
COL7A1-206ENST00000466591 NASPP49321 788 aaPredicted RBP18.87■□□□□ 0.61
COL7A1-206ENST00000466591 MYO1EQ12965 1108 aa18.87■□□□□ 0.61
COL7A1-206ENST00000466591 CRELD2Q6UXH1 353 aaPredicted RBP18.87■□□□□ 0.61
COL7A1-206ENST00000466591 ARID3BQ8IVW6 561 aaPredicted RBP18.87■□□□□ 0.61
COL7A1-206ENST00000466591 GPD1LQ8N335 351 aa18.87■□□□□ 0.61
COL7A1-206ENST00000466591 IQUBQ8NA54 791 aa18.87■□□□□ 0.61
COL7A1-206ENST00000466591 SECISBP2LQ93073 1101 aaKnown RBP18.87■□□□□ 0.61
COL7A1-206ENST00000466591 ITGA11Q9UKX5 1188 aa18.87■□□□□ 0.61
COL7A1-206ENST00000466591 MAGED2Q9UNF1 606 aaPredicted RBP18.87■□□□□ 0.61
COL7A1-206ENST00000466591 ZFHX2Q9C0A1 2572 aaPredicted RBP18.86■□□□□ 0.61
COL7A1-206ENST00000466591 PPP6R2O75170 966 aa18.86■□□□□ 0.61
COL7A1-206ENST00000466591 PRPF40AO75400 957 aaKnown RBP18.86■□□□□ 0.61
COL7A1-206ENST00000466591 MOSPD3O75425 235 aa18.86■□□□□ 0.61
COL7A1-206ENST00000466591 VNN2O95498 520 aa18.86■□□□□ 0.61
COL7A1-206ENST00000466591 PDIA4P13667 645 aaKnown RBP18.86■□□□□ 0.61
COL7A1-206ENST00000466591 CASP5P51878 434 aa18.86■□□□□ 0.61
COL7A1-206ENST00000466591 RBP5P82980 135 aa18.86■□□□□ 0.61
COL7A1-206ENST00000466591 SURF1Q15526 300 aa18.86■□□□□ 0.61
COL7A1-206ENST00000466591 NFE2Q16621 373 aaPredicted RBP18.86■□□□□ 0.61
COL7A1-206ENST00000466591 C1orf228Q6PIY5 440 aa18.86■□□□□ 0.61
COL7A1-206ENST00000466591 TMC8Q8IU68 726 aa18.86■□□□□ 0.61
COL7A1-206ENST00000466591 LINC00301Q8NCQ3 95 aa18.86■□□□□ 0.61
COL7A1-206ENST00000466591 CBWD1Q9BRT8 395 aa18.86■□□□□ 0.61
COL7A1-206ENST00000466591 DNAJC25Q9H1X3 360 aa18.86■□□□□ 0.61
COL7A1-206ENST00000466591 TRPV4Q9HBA0 871 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms