RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 ASB3Q9Y575 518 aa17.43■□□□□ 0.38
COL7A1-204ENST00000462475 CHADO15335 359 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 ATF6P18850 670 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 GABRR2P28476 465 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 PUM1Q14671 1186 aaKnown RBP eCLIP17.42■□□□□ 0.38
COL7A1-204ENST00000462475 WDR44Q5JSH3 913 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 SFR1Q86XK3 245 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 EFCAB13Q8IY85 973 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 CSGALNACT1Q8TDX6 532 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 EPSTI1Q96J88 318 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 SEPT5Q99719 369 aaPredicted RBP17.42■□□□□ 0.38
COL7A1-204ENST00000462475 IER2Q9BTL4 223 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 FAM126AQ9BYI3 521 aaPredicted RBP17.42■□□□□ 0.38
COL7A1-204ENST00000462475 CCSER1Q9C0I3 900 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 ZCWPW1Q9H0M4 648 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 ST6GALNAC4Q9H4F1 302 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 ASB7Q9H672 318 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 DLL3Q9NYJ7 618 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 AGO2Q9UKV8 859 aaKnown RBP17.42■□□□□ 0.38
COL7A1-204ENST00000462475 C2CD2Q9Y426 696 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 STYXL1Q9Y6J8 313 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 NCOR2Q9Y618 2525 aa17.42■□□□□ 0.38
COL7A1-204ENST00000462475 VPS37CA5D8V6 355 aaPredicted RBP17.41■□□□□ 0.38
COL7A1-204ENST00000462475 CYB561D2O14569 222 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 PRAMEF12O95522 483 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 PAX3P23760 479 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 ABCD1P33897 745 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 DDIT3P35638 169 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 CYP4F8P98187 520 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 SATB1Q01826 763 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 RSPO4Q2I0M5 234 aaPredicted RBP17.41■□□□□ 0.38
COL7A1-204ENST00000462475 MGAT5BQ3V5L5 792 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 GPR158Q5T848 1215 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 TXNDC11Q6PKC3 985 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 CRELD2Q6UXH1 353 aaPredicted RBP17.41■□□□□ 0.38
COL7A1-204ENST00000462475 MAMSTRQ6ZN01 415 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 DYMQ7RTS9 669 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 ITIH5Q86UX2 942 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 TTC8Q8TAM2 541 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 ZFYVE19Q96K21 471 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 PYM1Q9BRP8 204 aaKnown RBP17.41■□□□□ 0.38
COL7A1-204ENST00000462475 UPF2Q9HAU5 1272 aaKnown RBP17.41■□□□□ 0.38
COL7A1-204ENST00000462475 RBM12Q9NTZ6 932 aaKnown RBP17.41■□□□□ 0.38
COL7A1-204ENST00000462475 HSFX1Q9UBD0 423 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 DSEQ9UL01 958 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 CLIC4Q9Y696 253 aa17.41■□□□□ 0.38
COL7A1-204ENST00000462475 PPP1R37O75864 691 aa17.4■□□□□ 0.38
COL7A1-204ENST00000462475 ADSSP30520 456 aa17.4■□□□□ 0.38
COL7A1-204ENST00000462475 TAF6P49848 677 aa17.4■□□□□ 0.38
COL7A1-204ENST00000462475 CCR3P51677 355 aa17.4■□□□□ 0.38
COL7A1-204ENST00000462475 KPNA1P52294 538 aaPredicted RBP17.4■□□□□ 0.38
COL7A1-204ENST00000462475 MLLT6P55198 1093 aaPredicted RBP17.4■□□□□ 0.38
COL7A1-204ENST00000462475 PTPAQ15257 358 aa17.4■□□□□ 0.38
COL7A1-204ENST00000462475 WSCD1Q658N2 575 aa17.4■□□□□ 0.38
COL7A1-204ENST00000462475 SLFN12LQ6IEE8 588 aa17.4■□□□□ 0.38
COL7A1-204ENST00000462475 ZNF720Q7Z2F6 126 aa17.4■□□□□ 0.38
COL7A1-204ENST00000462475 LRRTM3Q86VH5 581 aa17.4■□□□□ 0.38
COL7A1-204ENST00000462475 KRI1Q8N9T8 703 aaKnown RBP17.4■□□□□ 0.38
COL7A1-204ENST00000462475 FAM200AQ8TCP9 573 aa17.4■□□□□ 0.38
COL7A1-204ENST00000462475 MSANTD3Q96H12 275 aa17.4■□□□□ 0.38
COL7A1-204ENST00000462475 C8orf33Q9H7E9 229 aaPredicted RBP17.4■□□□□ 0.38
COL7A1-204ENST00000462475 IL21Q9HBE4 155 aa17.4■□□□□ 0.38
COL7A1-204ENST00000462475 DPP3Q9NY33 737 aa17.4■□□□□ 0.38
COL7A1-204ENST00000462475 GTSE1Q9NYZ3 720 aa17.4■□□□□ 0.38
COL7A1-204ENST00000462475 MYBPHLA2RUH7 354 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 SPECC1L-ADORA2AF8WAN1 911 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 DPYSL4O14531 572 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 FGF19O95750 216 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 CTHP32929 405 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 TUFMP49411 452 aaKnown RBP17.39■□□□□ 0.37
COL7A1-204ENST00000462475 WNT7BP56706 349 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 KCNA1Q09470 495 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 PPP2R5DQ14738 602 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 VEPH1Q14D04 833 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 LPAL2Q16609 132 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 ARHGAP15Q53QZ3 475 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 Q6ZS52 159 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 METTL23Q86XA0 190 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 GIPC2Q8TF65 315 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 POMGNT1Q8WZA1 660 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 SECISBP2LQ93073 1101 aaKnown RBP17.39■□□□□ 0.37
COL7A1-204ENST00000462475 HVCN1Q96D96 273 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 SMG9Q9H0W8 520 aaKnown RBP17.39■□□□□ 0.37
COL7A1-204ENST00000462475 STK17AQ9UEE5 414 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 FBXO2Q9UK22 296 aaPredicted RBP17.39■□□□□ 0.37
COL7A1-204ENST00000462475 ANK1P16157 1881 aa17.39■□□□□ 0.37
COL7A1-204ENST00000462475 SCN1AP35498 2009 aa17.38■□□□□ 0.37
COL7A1-204ENST00000462475 MYMKA6NI61 221 aa17.38■□□□□ 0.37
COL7A1-204ENST00000462475 TGM1P22735 817 aa17.38■□□□□ 0.37
COL7A1-204ENST00000462475 CXCL12P48061 93 aa17.38■□□□□ 0.37
COL7A1-204ENST00000462475 NRLP54845 237 aa17.38■□□□□ 0.37
COL7A1-204ENST00000462475 TNK2Q07912 1038 aa17.38■□□□□ 0.37
COL7A1-204ENST00000462475 DMWDQ09019 674 aa17.38■□□□□ 0.37
COL7A1-204ENST00000462475 LRRC32Q14392 662 aa17.38■□□□□ 0.37
COL7A1-204ENST00000462475 ARHGAP29Q52LW3 1261 aa17.38■□□□□ 0.37
COL7A1-204ENST00000462475 C1orf228Q6PIY5 440 aa17.38■□□□□ 0.37
COL7A1-204ENST00000462475 ZSWIM2Q8NEG5 633 aa17.38■□□□□ 0.37
COL7A1-204ENST00000462475 CLIC6Q96NY7 704 aa17.38■□□□□ 0.37
COL7A1-204ENST00000462475 STRA6Q9BX79 667 aa17.38■□□□□ 0.37
COL7A1-204ENST00000462475 TASP1Q9H6P5 420 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms