RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 CRB3Q9BUF7 120 aa5.25□□□□□ -1.57
CSMD3-205ENST00000462254 WDR12Q9GZL7 423 aaKnown RBP5.25□□□□□ -1.57
CSMD3-205ENST00000462254 KCNK12Q9HB15 430 aa5.25□□□□□ -1.57
CSMD3-205ENST00000462254 AGO4Q9HCK5 861 aaKnown RBP5.25□□□□□ -1.57
CSMD3-205ENST00000462254 MTMR4Q9NYA4 1195 aa5.25□□□□□ -1.57
CSMD3-205ENST00000462254 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.25□□□□□ -1.57
CSMD3-205ENST00000462254 TNFRSF10DQ9UBN6 386 aa5.25□□□□□ -1.57
CSMD3-205ENST00000462254 GPR160Q9UJ42 338 aa5.25□□□□□ -1.57
CSMD3-205ENST00000462254 ZNF112Q9UJU3 913 aa5.25□□□□□ -1.57
CSMD3-205ENST00000462254 NAP1L2Q9ULW6 460 aaPredicted RBP5.25□□□□□ -1.57
CSMD3-205ENST00000462254 STX8Q9UNK0 236 aa5.25□□□□□ -1.57
CSMD3-205ENST00000462254 MGAMO43451 1857 aa5.25□□□□□ -1.57
CSMD3-205ENST00000462254 PLXNB2O15031 1838 aa5.25□□□□□ -1.57
CSMD3-205ENST00000462254 A0A1B0GVC2 190 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 A0A1W2PRG0 241 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 RASA4BC9J798 803 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 J3KRW8 73 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 ZBTB43O43298 467 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 RASA4O43374 803 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 FIBPO43427 364 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 JAK2O60674 1132 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 SNX2O60749 519 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 PLEKHA8P1O95397 391 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 TTLL1O95922 423 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 GLI1P08151 1106 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 SNRPB2P08579 225 aaKnown RBP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 TOP1P11387 765 aaKnown RBP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 EEF2P13639 858 aaKnown RBP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 RXRGP48443 463 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 METAP2P50579 478 aaKnown RBP eCLIP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 MECP2P51608 486 aaKnown RBP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 RCAN1P53805 252 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 ICA1Q05084 483 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 SEMA5AQ13591 1074 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 PRKG1Q13976 671 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 ZNF267Q14586 743 aaPredicted RBP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 SLC14A2Q15849 920 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 CCDC96Q2M329 555 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 SLC35G1Q2M3R5 365 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 HSF5Q4G112 596 aaPredicted RBP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 CCDC178Q5BJE1 867 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 MZT2BQ6NZ67 158 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 TLDC1Q6P9B6 456 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 USP53Q70EK8 1073 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 MOB2Q70IA6 237 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 RSRC2Q7L4I2 434 aaKnown RBP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 MTDHQ86UE4 582 aaKnown RBP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 SLCO6A1Q86UG4 719 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 NLRX1Q86UT6 975 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 EFHBQ8N7U6 833 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 NAT16Q8N8M0 369 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 ZBTB34Q8NCN2 500 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 NAXEQ8NCW5 288 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 FAM156AQ8NDB6 213 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 NSUN7Q8NE18 718 aaKnown RBP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 SMARCC2Q8TAQ2 1214 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 NUP133Q8WUM0 1156 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 ZKSCAN4Q969J2 545 aaPredicted RBP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 INTS4Q96HW7 963 aaKnown RBP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 PTCHD1Q96NR3 888 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 JMJD8Q96S16 334 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 WRNIP1Q96S55 665 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 SERINC2Q96SA4 455 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 ACO2Q99798 780 aaKnown RBP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 ZNF341Q9BYN7 854 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 CELF4Q9BZC1 486 aaKnown RBP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 RSPH9Q9H1X1 276 aaPredicted RBP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 KAT14Q9H8E8 782 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 GPRC5CQ9NQ84 441 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 RASSF1Q9NS23 344 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 NYAP2Q9P242 653 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 CLIP2Q9UDT6 1046 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 NOL7Q9UMY1 257 aaKnown RBP5.24□□□□□ -1.57
CSMD3-205ENST00000462254 DOCK3Q8IZD9 2030 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 DOCK5Q9H7D0 1870 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 MCM3APO60318 1980 aa5.24□□□□□ -1.57
CSMD3-205ENST00000462254 PTPDC1A2A3K4 754 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 FAM227AF5H4B4 570 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 UBE2Q2LH0YL09 131 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 PQBP1O60828 265 aaKnown RBP5.23□□□□□ -1.57
CSMD3-205ENST00000462254 CKMP06732 381 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 ASNSP08243 561 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 CALM1P0DP23 149 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 CALM2P0DP24 149 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 CALM3P0DP25 149 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 SNHG28P0DPA3 235 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 PDHBP11177 359 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 FDPSP14324 419 aaKnown RBP5.23□□□□□ -1.57
CSMD3-205ENST00000462254 ENDOUP21128 410 aaKnown RBP5.23□□□□□ -1.57
CSMD3-205ENST00000462254 GJB2P29033 226 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 PKP1Q13835 747 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 GRM4Q14833 912 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 RAB3GAP1Q15042 981 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 SUPT20HL1Q3ZLR7 823 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 TMEM177Q53S58 311 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 KIAA1755Q5JYT7 1200 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 INTS11Q5TA45 600 aaKnown RBP5.23□□□□□ -1.57
CSMD3-205ENST00000462254 BROXQ5VW32 411 aa5.23□□□□□ -1.57
CSMD3-205ENST00000462254 RSPO2Q6UXX9 243 aaPredicted RBP5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms