RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SBF1O95248 1867 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 CCDC88AQ3V6T2 1871 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 TIAM2Q8IVF5 1701 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 ITGB4P16144 1822 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 CLRN2A0PK11 232 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 STMND1H3BQB6 276 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 INO80B-WBP1J3KQ70 363 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 VWA5AO00534 786 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 NOP56O00567 594 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 E2F3O00716 465 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 NCK2O43639 380 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 SEC24DO94855 1032 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 SOD2P04179 222 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 TOP1P11387 765 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 IL2RBP14784 551 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 CD247P20963 164 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 FUT4P22083 530 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 CTCFP49711 727 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 ETV1P50549 477 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 CLNS1AP54105 237 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 RARSP54136 660 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 BEX3Q00994 111 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 CUL3Q13618 768 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 MINDY4Q4G0A6 757 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 CEP78Q5JTW2 689 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 KRBOX4Q5JUW0 171 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 MCTP1Q6DN14 999 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 PSAPL1Q6NUJ1 521 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 XRRA1Q6P2D8 792 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 IGF2-ASQ6U949 168 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 USP53Q70EK8 1073 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 UBE2R2Q712K3 238 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 NLRP9Q7RTR0 991 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 MAMDC2Q7Z304 686 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 COL23A1Q86Y22 540 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 SCYL3Q8IZE3 742 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 CRACR2BQ8N4Y2 399 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 NOC3LQ8WTT2 800 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 LZICQ8WZA0 190 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 KIFC2Q96AC6 838 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 ZNF837Q96EG3 531 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 BTBD6Q96KE9 485 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 MFSD14AQ96MC6 490 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 STRBPQ96SI9 672 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 HNRNPABQ99729 332 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 NUDT16L1Q9BRJ7 211 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 USP26Q9BXU7 913 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 H2AFY2Q9P0M6 372 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 ARHGAP28Q9P2N2 729 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 HPCAL4Q9UM19 191 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 COG5Q9UP83 839 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 EXOC7Q9UPT5 735 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 R3HDM2Q9Y2K5 976 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 COQ6Q9Y2Z9 468 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 FRMPD2Q68DX3 1309 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 KCPQ6ZWJ8 1503 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 HTR3EA5X5Y0 456 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 TRIM75PA6NK02 468 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 HAT1O14929 419 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 CHUKO15111 745 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 PMM2O15305 246 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 MTSS1O43312 755 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 ADCY5O95622 1261 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 ASGR2P07307 311 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 ZFYP08048 801 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 XPAP23025 273 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 ACADSBP45954 432 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 PHKA1P46020 1223 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 SULT1E1P49888 294 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 GPC3P51654 580 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 YARSP54577 528 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 RING1Q06587 406 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 PRKG1Q13976 671 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 ELF2Q15723 593 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 STK11Q15831 433 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 ATP13A4Q4VNC1 1196 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 HSP90AA5PQ58FG0 334 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 CFAP157Q5JU67 520 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 TPGS2Q68CL5 300 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 OTUD7BQ6GQQ9 843 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 DENND5AQ6IQ26 1287 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 CXorf57Q6NSI4 855 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 PGM2L1Q6PCE3 622 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 CEP128Q6ZU80 1094 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 GAS2L3Q86XJ1 694 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 NRSN1Q8IZ57 195 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 TRMT2AQ8IZ69 625 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 IL22RA1Q8N6P7 574 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 SUPT20HQ8NEM7 779 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 SLC22A8Q8TCC7 542 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 SGK3Q96BR1 496 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 BARD1Q99728 777 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 GBP3Q9H0R5 595 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 CYP4F12Q9HCS2 524 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 EMC7Q9NPA0 242 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 C14orf119Q9NWQ9 140 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 THG1LQ9NWX6 298 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 FNIP2Q9P278 1114 aa5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 CCNL1Q9UK58 526 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-209ENST00000456975 PTBP2Q9UKA9 531 aaKnown RBP5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms