RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 ZFP42Q96MM3 310 aa15.17■□□□□ 0.02
USP39-207ENST00000450066 ZNF560Q96MR9 790 aa15.17■□□□□ 0.02
USP39-207ENST00000450066 TWNKQ96RR1 684 aa15.17■□□□□ 0.02
USP39-207ENST00000450066 PSMB7Q99436 277 aa15.17■□□□□ 0.02
USP39-207ENST00000450066 ELOVL4Q9GZR5 314 aa15.17■□□□□ 0.02
USP39-207ENST00000450066 ADAM22Q9P0K1 906 aa15.17■□□□□ 0.02
USP39-207ENST00000450066 RNF14Q9UBS8 474 aa15.17■□□□□ 0.02
USP39-207ENST00000450066 HMGXB4Q9UGU5 601 aa15.17■□□□□ 0.02
USP39-207ENST00000450066 AMFRQ9UKV5 643 aa15.17■□□□□ 0.02
USP39-207ENST00000450066 PACSIN2Q9UNF0 486 aaPredicted RBP15.17■□□□□ 0.02
USP39-207ENST00000450066 GIT1Q9Y2X7 761 aa15.17■□□□□ 0.02
USP39-207ENST00000450066 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.17■□□□□ 0.02
USP39-207ENST00000450066 SNX9Q9Y5X1 595 aa15.17■□□□□ 0.02
USP39-207ENST00000450066 CD19P15391 556 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 LRPAP1P30533 357 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 SSTR3P32745 418 aaPredicted RBP15.16■□□□□ 0.02
USP39-207ENST00000450066 SOX4Q06945 474 aaPredicted RBP15.16■□□□□ 0.02
USP39-207ENST00000450066 LIN9Q5TKA1 542 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 TRAF7Q6Q0C0 670 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 CAGE1Q8TC20 777 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 LHX5Q9H2C1 402 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 SLC38A7Q9NVC3 462 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 GDAP2Q9NXN4 497 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 CHORDC1Q9UHD1 332 aaPredicted RBP15.16■□□□□ 0.02
USP39-207ENST00000450066 KIAA1257Q9ULG3 409 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 CEP83Q9Y592 693 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 A0A0U1RQF3 1178 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 MEIS3P2A8K0S8 358 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 MGEA5O60502 916 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 MMP8P22894 467 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 RRM1P23921 792 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 CDK7P50613 346 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 NDST1P52848 882 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 PTP4A2Q12974 167 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 ELF2Q15723 593 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 ZNF572Q7Z3I7 529 aaPredicted RBP15.16■□□□□ 0.02
USP39-207ENST00000450066 GSTCDQ8NEC7 633 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 NT5C1AQ9BXI3 368 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 WBP1LQ9NX94 342 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 SCN1AP35498 2009 aa15.16■□□□□ 0.02
USP39-207ENST00000450066 KPNA7A9QM74 516 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 PDE2AO00408 941 aaPredicted RBP15.15■□□□□ 0.02
USP39-207ENST00000450066 VDRP11473 427 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 SKIP12755 728 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 MLH1P40692 756 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 TAF6P49848 677 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 AGMOQ6ZNB7 445 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 MMS22LQ6ZRQ5 1243 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 RABGGTAQ92696 567 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 ADAM2Q99965 735 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 C11orf70Q9BRQ4 267 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 GOLGA2P5Q9HBQ8 144 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 ALG6Q9Y672 507 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 ARL5CA6NH57 179 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 DNA2P51530 1060 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 ITIH3Q06033 890 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 ORC1Q13415 861 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 CNGA2Q16280 664 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 SOWAHAQ2M3V2 549 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 SV2CQ496J9 727 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 CFAP221Q4G0U5 840 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 CCDC181Q5TID7 509 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 WDTC1Q8N5D0 677 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 ANKRD7Q92527 254 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 PBKQ96KB5 322 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 HEXIM2Q96MH2 286 aaKnown RBP15.15■□□□□ 0.02
USP39-207ENST00000450066 DEFB118Q96PH6 123 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 RPS6KC1Q96S38 1066 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 GAD1Q99259 594 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 MRPL47Q9HD33 250 aaKnown RBP15.15■□□□□ 0.02
USP39-207ENST00000450066 OGDHLQ9ULD0 1010 aa15.15■□□□□ 0.02
USP39-207ENST00000450066 KCNK3O14649 394 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 SPTLC1O15269 473 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 CALB1P05937 261 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 THP07101 528 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 PAFAH1B1P43034 410 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 LILRA4P59901 499 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 MTFR1Q15390 333 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 SGO2Q562F6 1265 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 TEX35Q5T0J7 233 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 PLEKHA7Q6IQ23 1121 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 DENND1BQ6P3S1 775 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 LIMS2Q7Z4I7 341 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 UNC93AQ86WB7 457 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 C1orf131Q8NDD1 294 aaKnown RBP15.14■□□□□ 0.01
USP39-207ENST00000450066 LPPQ93052 612 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 PGBD4Q96DM1 585 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 MRPL45Q9BRJ2 306 aaKnown RBP15.14■□□□□ 0.01
USP39-207ENST00000450066 UBN1Q9NPG3 1134 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.14■□□□□ 0.01
USP39-207ENST00000450066 SCINQ9Y6U3 715 aa15.14■□□□□ 0.01
USP39-207ENST00000450066 CCL5P13501 91 aa15.13■□□□□ 0.01
USP39-207ENST00000450066 MESDQ14696 234 aa15.13■□□□□ 0.01
USP39-207ENST00000450066 MBTPS1Q14703 1052 aa15.13■□□□□ 0.01
USP39-207ENST00000450066 PTPROQ16827 1216 aa15.13■□□□□ 0.01
USP39-207ENST00000450066 C2CD6Q53TS8 623 aa15.13■□□□□ 0.01
USP39-207ENST00000450066 GPR161Q8N6U8 529 aaKnown RBP15.13■□□□□ 0.01
USP39-207ENST00000450066 RNF208Q9H0X6 261 aa15.13■□□□□ 0.01
USP39-207ENST00000450066 TSPYL2Q9H2G4 693 aaPredicted RBP15.13■□□□□ 0.01
USP39-207ENST00000450066 PARVAQ9NVD7 372 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms