RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 CENPPQ6IPU0 288 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 TPRG1Q6ZUI0 275 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 DCP1BQ8IZD4 617 aaKnown RBP7.65□□□□□ -1.18
VPS41-208ENST00000448833 SYCP3Q8IZU3 236 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 ZSCAN18Q8TBC5 510 aaPredicted RBP7.65□□□□□ -1.18
VPS41-208ENST00000448833 SPPL2BQ8TCT7 592 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 FAM3CQ92520 227 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 PSMG2Q969U7 264 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 EXOC4Q96A65 974 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 SENP8Q96LD8 212 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 ZNF560Q96MR9 790 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 ACCSQ96QU6 501 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 FOXQ1Q9C009 403 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 HAPLN2Q9GZV7 340 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 C8orf33Q9H7E9 229 aaPredicted RBP7.65□□□□□ -1.18
VPS41-208ENST00000448833 TMEM206Q9H813 350 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 ZNF334Q9HCZ1 680 aaPredicted RBP7.65□□□□□ -1.18
VPS41-208ENST00000448833 SCUBE2Q9NQ36 999 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 OLFML3Q9NRN5 406 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 THG1LQ9NWX6 298 aaKnown RBP7.65□□□□□ -1.18
VPS41-208ENST00000448833 ZSCAN32Q9NX65 697 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 DPP3Q9NY33 737 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 OBP2AQ9NY56 170 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 CEP72Q9P209 647 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 METRNQ9UJH8 293 aa7.65□□□□□ -1.18
VPS41-208ENST00000448833 SPTBN4Q9H254 2564 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 KPNA7A9QM74 516 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 CYB561D2O14569 222 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 MEFVO15553 781 aaPredicted RBP7.64□□□□□ -1.19
VPS41-208ENST00000448833 CD2BP2O95400 341 aaKnown RBP7.64□□□□□ -1.19
VPS41-208ENST00000448833 SYT1P21579 422 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 GARTP22102 1010 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 DDX6P26196 483 aaKnown RBP eCLIP7.64□□□□□ -1.19
VPS41-208ENST00000448833 CDC25CP30307 473 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 NMT1P30419 496 aaKnown RBP7.64□□□□□ -1.19
VPS41-208ENST00000448833 GDI1P31150 447 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 STAT6P42226 847 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 ID4P47928 161 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 ACOT2P49753 483 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 CCR3P51677 355 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 TSPY1Q01534 308 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 LRRC32Q14392 662 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 SURF1Q15526 300 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 NFE2Q16621 373 aaPredicted RBP7.64□□□□□ -1.19
VPS41-208ENST00000448833 ARHGAP29Q52LW3 1261 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 VITQ6UXI7 678 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 DYMQ7RTS9 669 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 DNAJB7Q7Z6W7 309 aaPredicted RBP7.64□□□□□ -1.19
VPS41-208ENST00000448833 CCDC65Q8IXS2 484 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 TMEM86AQ8N2M4 240 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 SPATA18Q8TC71 538 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 FAM200AQ8TCP9 573 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 TCEAL4Q96EI5 215 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 EPSTI1Q96J88 318 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 PGLYRP2Q96PD5 576 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 HINFPQ9BQA5 517 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 PLA2G2FQ9BZM2 168 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 CUEDC2Q9H467 287 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 KIAA1586Q9HCI6 787 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 HEBP1Q9NRV9 189 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 RAB23Q9ULC3 237 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 YIPF1Q9Y548 306 aa7.64□□□□□ -1.19
VPS41-208ENST00000448833 TIMM13Q9Y5L4 95 aaPredicted RBP7.64□□□□□ -1.19
VPS41-208ENST00000448833 DMXL1Q9Y485 3027 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 A0A1W2PRU2 124 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 MTMR11A4FU01 709 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 HEPACAM2A8MVW5 462 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 ANKRD63C9JTQ0 380 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 FOXD2O60548 495 aaPredicted RBP7.63□□□□□ -1.19
VPS41-208ENST00000448833 HUS1O60921 280 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 GCNT3O95395 438 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 NFICP08651 508 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 IDEP14735 1019 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 CD72P21854 359 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 FCARP24071 287 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 CNR2P34972 360 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 CCR2P41597 374 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 KPNA1P52294 538 aaPredicted RBP7.63□□□□□ -1.19
VPS41-208ENST00000448833 SNRPFP62306 86 aaKnown RBP7.63□□□□□ -1.19
VPS41-208ENST00000448833 RPL10AP62906 217 aaKnown RBP7.63□□□□□ -1.19
VPS41-208ENST00000448833 CSTF1Q05048 431 aaKnown RBP7.63□□□□□ -1.19
VPS41-208ENST00000448833 FCHO2Q0JRZ9 810 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 MYO1EQ12965 1108 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 SLC39A14Q15043 492 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 TEAD2Q15562 447 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 MGAT5BQ3V5L5 792 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 SLC39A12Q504Y0 691 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 ZC2HC1CQ53FD0 456 aaPredicted RBP7.63□□□□□ -1.19
VPS41-208ENST00000448833 DGKKQ5KSL6 1271 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 L1TD1Q5T7N2 865 aaKnown RBP7.63□□□□□ -1.19
VPS41-208ENST00000448833 DPH6Q7L8W6 267 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 RALGPS2Q86X27 583 aaPredicted RBP7.63□□□□□ -1.19
VPS41-208ENST00000448833 SFR1Q86XK3 245 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 ARID3BQ8IVW6 561 aaPredicted RBP7.63□□□□□ -1.19
VPS41-208ENST00000448833 SYNPOQ8N3V7 929 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 CELF5Q8N6W0 485 aaKnown RBP7.63□□□□□ -1.19
VPS41-208ENST00000448833 LRRC52Q8N7C0 313 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 ZBTB44Q8NCP5 570 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 ST13P5Q8NFI4 369 aaPredicted RBP7.63□□□□□ -1.19
VPS41-208ENST00000448833 SHKBP1Q8TBC3 707 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms