RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TMEM161BQ8NDZ6 487 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 STKLD1Q8NE28 680 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 DDX27Q96GQ7 796 aaKnown RBP7.79□□□□□ -1.16
SYNE1-213ENST00000448038 SNF8Q96H20 258 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 TMEM176AQ96HP8 235 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 NUDCD1Q96RS6 583 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 YME1L1Q96TA2 773 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 EPC1Q9H2F5 836 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 TMEM39AQ9NV64 488 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 LSM7Q9UK45 103 aaKnown RBP7.79□□□□□ -1.16
SYNE1-213ENST00000448038 LRRIQ3A6PVS8 624 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-213ENST00000448038 RRP1BQ14684 758 aaKnown RBP7.79□□□□□ -1.16
SYNE1-213ENST00000448038 RPS6KA2Q15349 733 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 SKIV2LQ15477 1246 aaKnown RBP7.79□□□□□ -1.16
SYNE1-213ENST00000448038 C6orf118Q5T5N4 469 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 JADE1Q6IE81 842 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 ELMO3Q96BJ8 720 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 OSBPL8Q9BZF1 889 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 PLAAQ9Y263 795 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 H7C4K7 107 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 LHX1P48742 406 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 PTPN11Q06124 597 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-213ENST00000448038 ADCY2Q08462 1091 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 TSTA3Q13630 321 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-213ENST00000448038 HSDL1Q3SXM5 330 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 ACCSLQ4AC99 568 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 GKAP1Q5VSY0 366 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-213ENST00000448038 IZUMO3Q5VZ72 239 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 NXNQ6DKJ4 435 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 ZNF571Q7Z3V5 609 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-213ENST00000448038 TPCN2Q8NHX9 752 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 FAN1Q9Y2M0 1017 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 IQANK1A0A1B0GTG1 560 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 EEF2KO00418 725 aaKnown RBP7.79□□□□□ -1.16
SYNE1-213ENST00000448038 KCNN4O15554 427 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 ALDH2P05091 517 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 GZMAP12544 262 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 EIF4BP23588 611 aaKnown RBP7.79□□□□□ -1.16
SYNE1-213ENST00000448038 DUSP28Q4G0W2 176 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 HYIQ5T013 277 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 MTHFD1LQ6UB35 978 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 SDCCAG8Q86SQ7 713 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-213ENST00000448038 CACNA2D3Q8IZS8 1091 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 SLC20A1Q8WUM9 679 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 PPM1EQ8WY54 764 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 SENP6Q9GZR1 1112 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-213ENST00000448038 ARHGAP20Q9P2F6 1191 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 KANSL3Q9P2N6 904 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 DSEQ9UL01 958 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 PLCH1Q4KWH8 1693 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 CIB2O75838 187 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 CCNE2O96020 404 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 S100BP04271 92 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-213ENST00000448038 CAPSQ13938 189 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 ZNF235Q14590 738 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 CTXN3Q4LDR2 81 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 HP1BP3Q5SSJ5 553 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-213ENST00000448038 ABHD15Q6UXT9 468 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 BCAS4Q8TDM0 211 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 CAPNS2Q96L46 248 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 LRRC1Q9BTT6 524 aa7.79□□□□□ -1.16
SYNE1-213ENST00000448038 LTBP4Q8N2S1 1624 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 CYBBP04839 570 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 BMP6P22004 513 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 BCAT1P54687 386 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 NAA30Q147X3 362 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-213ENST00000448038 C10orf120Q5SQS8 335 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 TDRD10Q5VZ19 366 aaKnown RBP7.78□□□□□ -1.16
SYNE1-213ENST00000448038 ARHGEF19Q8IW93 802 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 MCUQ8NE86 351 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 PPTC7Q8NI37 304 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 PACSIN1Q9BY11 444 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.78□□□□□ -1.16
SYNE1-213ENST00000448038 BFARQ9NZS9 450 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 LMCD1Q9NZU5 365 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 CDY2AQ9Y6F7 541 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 PHF2O75151 1096 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 RECQL4O94761 1208 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 LYPLA2O95372 231 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 ARHGAP25P42331 645 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 PMS2P54278 862 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 PDIA2Q13087 525 aaKnown RBP7.78□□□□□ -1.16
SYNE1-213ENST00000448038 KIAA0319LQ8IZA0 1049 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 MCUR1Q96AQ8 359 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 BTBD6Q96KE9 485 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 TTC25Q96NG3 672 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 ADAM2Q99965 735 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 ZNF518BQ9C0D4 1074 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 SMARCAL1Q9NZC9 954 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 TIMM13Q9Y5L4 95 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-213ENST00000448038 MROH7Q68CQ1 1323 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 ZC3H4Q9UPT8 1303 aaKnown RBP7.78□□□□□ -1.16
SYNE1-213ENST00000448038 SNED1Q8TER0 1413 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 KRT37O76014 449 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 IRF1P10914 325 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 PPARGP37231 505 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-213ENST00000448038 CLK2P49760 499 aaKnown RBP7.78□□□□□ -1.16
SYNE1-213ENST00000448038 KPNA2P52292 529 aaKnown RBP7.78□□□□□ -1.16
SYNE1-213ENST00000448038 CBWD6Q4V339 395 aa7.78□□□□□ -1.16
SYNE1-213ENST00000448038 CBWD3Q5JTY5 395 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms